Gene detail

Detail information of GWHGAAZE031811

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010067661.1	0	PREDICTED: dnaJ homolog subfamily C member 2 [Eucalyptus grandis]
COG	YP_001994979.1	0.000000002	heat shock protein DnaJ domain-containing protein
Swissprot	tr\|Q0WTI8\|DNJ72_ARATH	0.0000009	Chaperone protein dnaJ 72
trEMBL	tr\|A0A059BI98\|A0A059BI98_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW65838.1}
TAIR10	AT3G11450.1	0	DnaJ domain ;Myb-like DNA-binding domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65275296	65277260	+
GWHAAZE00000009	mRNA	65275296	65277260	+
GWHAAZE00000009	exon	65275296	65277020	+
GWHAAZE00000009	exon	65277051	65277260	+
GWHAAZE00000009	CDS	65275296	65277020	+
GWHAAZE00000009	CDS	65277051	65277260	+

Transcript Sequence
>GWHTAAZE031849 ATGGTTGCCCAGTCAAATATTCTACTTATATCCTACTCCCAGGAGATTGTAGATGGAGAACCAATCTATGCTTCCTCAAATTGCCTTCCAATCAAGGCATCAAAGTTCGAACCTGCTGGGCATTCGTTTCACTCTGCAGCCCTTAAACTCCGTGGTTGGTGCAAGGAAGAACCAGATGATAGTGAGAACAAGAATGTGCCGAATGAAAAGGAGCAGTCTTATGCGCAATCATCGGATTCATATAGCACCAAAGGTAAAAAGAAATCTGGTGCCGGTGAACAGGATCATTATGCATTATTGGGTCTCGGCCATTTGCGGTACCTAGCTACCGAGGAACAGATCCGAAAGAGCTACCGAGAGACTGCTTTAAAGTACCACCCTGACAAGCAGGCCGCTCTTCTTCTTGCTGAGGCAACCGAAGCTGCAAAAGAAACAAAGAAAGATGAAATAGAGAACCACTTCAAGGCCATTCAAGAAGCATATGAGGTGTTGATCGATCCAGTGAGGAGAAGAATTTATGATTCCACTGACGAGTTTGACGATGAAATCCCCACCGATTGTGCCCCACAGGACTTCTACAAGGTATTCGGACCCGCCTTTATGAGAAATGGGCGATGGTCAGTTACCCAACCTATTCCTACTTTGGGGGACGATAATACCCCACTGAAAGAAGTGGATAGTTTTTACAACTTCTGGTACGGTTTTCGAAGCTGGAGAGAGTTCCCACATGCTGACGAGTTTGATCTTGAGCAAGCTGAGTCTCGTGATCATAAGAGGTGGATGGAGAGACAGAACGCAAAACTCACAGAGAAGGCTAGGAAGGAAGAATATGCGCGTGTACGTTCTCTAGTAGACAATGCGTACAAACGGGACCCAAGGATTCTGAGAAGGAAAGAAGTGGAGAAAGCCGAGAAGCAGAAGAGAAAGGAGGCTAAATACCTGGCAAAGAAATTGCAGGAGGAAGAAGCGGCCCGGGCTGCAGAGGAGGAGAGACGTAAGAAAGAGGAAGAGGAAAAAAGGGCTGCAGAAATTGCTTCTCAGCAGAAGAAGGTGAAGGAGAAAGAGAAGAAACTACTATGTAAAGAGCGAAACCGCCTTCGAACGCTTTCTGGTTCCGTTTTGTCTCAGAATTTGCTTGATCTTGTCGAGGATGATGTGGAAAGCCTATGTATGTCACTCGATATGGATCATTTGAGGAACATATGTGATAAAATTGAGGGAAAAGAAGAGTTAGAGAAAGCTGAACTTCTCAGAGAAGCACTTGGACGAAAAGATAACTCAGAGGATAAGAACCACGACAGCAAGCAGAAGACGAGTATGAATCCTCAGGAAAATGCACCTATGAAGGCAAACGGAAACATAACGGGAAGCAGCTATCAGAAAAAAGAGAAACCTTGGGGAAAAGAAGAGATCGAGCTTTTACGTAAAGGGATTCAGAAGTATCCTAAAGGAACTTCTCGAAGGTGGGAGGTTATTTCAGAGTATATTGGTACCGGAAGGTCGGTTGAGGAGATTCTCAAGGCAACCAAAACTGTACTCCTCCAAAAGCCTGATTCTGCCAAAGCATTTGATTCCTTCCTCGAGAAGAGAAAGCCTGCACCAGCCATTGCTTCTCCCCTTACAACCAGAGATGAAGTAGAGCCGGTACCCACCAGTAACGGTCCCAAAAGCACCCCTGCTAAGACCGACAATTTGAAGGAAGCTTCAAGCCAAATTGCGAGTCCGGCGAATGGGGTTTCTTCGAGTTCGGACCAAGACGCGTGGTCCGCTGTCCAAGAACGAGCACTGGTTCAGGCCCTGAAAACTTTCCCGAAGGAAACTAGCCAGCGTTGGGAACGAGTTGCAACTGCAGTTCCAGGGAAGACCATGAACCAGTGCAAGAAGAAGTTCACTTCGTTGAAGGAGAACTTTAGAAGCAAGAAAAGTGCAGTTTAG

Network for GWHGAAZE031811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	95	174	9.70E-18
PF00249.32	Myb_DNA-binding	464	505	1.60E-05
PF00249.32	Myb_DNA-binding	587	633	3.30E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.194
	SRR3591706	second leaf	19.856
	SRR3591707	mature leaf	17.501
	SRR3591708	Shoot apex	19.155
	SRR3591709	Stem	23.940
	SRR3591710	White floral bud	40.719
	SRR3591711	White flower	54.982
	SRR3591712	Green floral bud	44.281
	SRR3591713	Yellow flower	37.460
SRP173429	SRR8316895	Juvenile bud stage	21.542
	SRR8316896	Juvenile bud stage	30.539
	SRR8316897	Juvenile bud stage	14.307
	SRR8316894	Third green stage	12.823
	SRR8316900	Third green stage	39.387
	SRR8316901	Third green stage	40.582
	SRR8316898	Complete white stage	12.947
	SRR8316899	Complete white stage	37.331
	SRR8316903	Complete white stage	24.373
	SRR8316902	Silver flowering stage	15.696
	SRR8316904	Silver flowering stage	20.729
	SRR8316905	Silver flowering stage	9.821
	SRR8316906	Gold flowering stage	28.647
	SRR8316907	Gold flowering stage	30.261
	SRR8316908	Gold flowering stage	30.997
SRP132670	SRR6706286	Control	42.176
	SRR6706287	Light intensity 50%	39.076
	SRR6706288	Light intensity 20%	41.380
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.840
	CNS0095593	Slightly white alabastrum(diploid) 2	27.738
	CNS0095594	Slightly white alabastrum(diploid) 3	35.020
	CNS0095595	Whole white alabastrum(diploid) 2	34.872
	CNS0095596	Whole white alabastrum(diploid) 3	35.558
	CNS0095597	Whole white alabastrum(diploid) 4	35.811
	CNS0095598	Silvery flower (diploied) 1	30.267
	CNS0095599	Silvery flower (diploied) 2	28.518
	CNS0095600	Silvery flower (diploied) 3	47.774
	CNS0095601	Golden flower (diploid) 1	24.027
	CNS0095602	Golden flower (diploid) 2	42.291
	CNS0095603	Golden flower (diploid) 3	43.714
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.938
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.278
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.226
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.916
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.399
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.267
	CNS0095610	Silvery flower (tetraploid) 1	37.631
	CNS0095611	Silvery flower (tetraploid) 2	38.709
	CNS0095612	Silvery flower (tetraploid) 3	37.727
	CNS0095613	Golden flower (tetraploid) 1	21.191
	CNS0095614	Golden flower (tetraploid) 2	32.370
	CNS0095615	Golden flower (tetraploid) 3	41.332
CRA001975	CRR073297	Stem 1	39.446
	CRR073298	Stem 2	36.877
	CRR073299	Stem 3	31.648
	CRR073300	Leaf 1	42.809
	CRR073301	Leaf 2	36.304
	CRR073302	Leaf 3	30.840
	CRR073303	Juvenile bud 1	37.313
	CRR073304	Juvenile bud 2	30.589
	CRR073305	Juvenile bud 3	48.399
	CRR073306	Third green 1	29.859
	CRR073307	Third green 2	23.705
	CRR073308	Third green 3	26.182
	CRR073309	Second white 1	23.322
	CRR073310	Second white 2	24.439
	CRR073311	Second white 3	25.537
	CRR073312	Silver flowering 1	32.330
	CRR073313	Silver flowering 2	38.687
	CRR073314	Silver flowering 3	32.269
	CRR073315	Gold flowering 1	16.632
	CRR073316	Gold flowering 2	23.795
	CRR073317	Gold flowering 3	18.849
	CRR073318	Tawny withering 1	34.913
	CRR073319	Tawny withering 2	33.250
	CRR073320	Tawny withering 3	34.372