Gene detail

Detail information of GWHGAAZE031785

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273935.1	0	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Vitis vinifera]
COG	YP_007591527.1	1E-11	SET domain-containing protein
Swissprot	tr\|Q9FF80\|SUVH1_ARATH	6E-157	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
trEMBL	tr\|F6HIW8\|F6HIW8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52193.1}
TAIR10	AT5G04940.2	1E-129	SU(VAR)3-9 homolog 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	64824442	64825494	-
GWHAAZE00000009	mRNA	64824442	64825494	-
GWHAAZE00000009	exon	64824749	64825494	-
GWHAAZE00000009	exon	64824442	64824715	-
GWHAAZE00000009	CDS	64824749	64825494	-
GWHAAZE00000009	CDS	64824442	64824715	-

Transcript Sequence
>GWHTAAZE031823 ATGAAAGATGTGGTGAACCCGTTGACAAAAGTTTATGTCTATGATGGGCTTTATGTAATTCGAGAGTCTTGGGTAGAGAAAGGGAAATCGGGTGGCAACAATTTTAAATATAAATTGGTGAGAGTACCTGGTCAACCTAGCGGTTTTGCTCTATGGAAATCAACCCAAGCATGGAAAGTTGGGTTTTCATCTCCGTCTGGGCTTATTCTTCCTGACCTCGCTTCTGGTGCCGAAAAGATCCCCGTTTCACTTGTAAATGATTTTGATGATGAGAGGGGCCCCACACATTTCACTTATTTTCCTACCCTTAAGTATTCGAAATCATTCAAATTGTTACAGCCTAGTTTCGGGTGCAATTGCCATAATGCATGCCGGCCCGATGATCTTAACTGCTCTTGTATACGCAAAAATGGAGGTGATTTCCCTTATACTGCAAACGGGGTACTAGTAGGCCGTAAACCGCTGGTGCATGAGTGTGGACCAACGTGCCCTTGCTTTTCTAATTGCAAGAATAAAGTTTCACAAACGGGTCTGAAGGTCCACATGGAAGTTTTCAAAACGGCTAACCGCGGTTGGGGCCTGCGGTCATGGGACCCTATTCGAGCTGGTACTTTTATTTGTGAATATGCCGGTGAAGTTATAGAGAGTTCGAAGGAAATGCACAGTGGGAACGGAGAAAATTGTTCGTATATCTTTGACACAGCCAATACTTATGATAGTTCATTCAAATGGAATTATGATCCCGCTGAAGATTATGATATCCCATCTCGATTAATCATTTCTGCAAAAACTATTGGGAATGTAGCTCGATTTATGAACCATAGTTGCTCTCCGAATGTTTTTTGGCAGCCGGTTCTGTATGAGCATAACAGCGAGTCTTTTCTCCATATTGCATTTTTCGCTATCAAACATATTCCTCCTATGACAGAGTTGACTTTTGATTATGGGGTCCCGTCTGAAACCCGTCTGAGGAAGAAGTGCTTATGTGGATCAGCAAAGTGCAGGGGCTTTTTTGTCTGA

Network for GWHGAAZE031785

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.18	SAD_SRA	7	45	1.20E-08
PF05033.17	Pre-SET	74	172	1.00E-19
PF00856.29	SET	191	316	1.30E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.996
	SRR3591706	second leaf	12.864
	SRR3591707	mature leaf	12.510
	SRR3591708	Shoot apex	46.891
	SRR3591709	Stem	26.493
	SRR3591710	White floral bud	14.740
	SRR3591711	White flower	16.984
	SRR3591712	Green floral bud	17.241
	SRR3591713	Yellow flower	8.911
SRP173429	SRR8316895	Juvenile bud stage	15.229
	SRR8316896	Juvenile bud stage	13.780
	SRR8316897	Juvenile bud stage	5.607
	SRR8316894	Third green stage	5.193
	SRR8316900	Third green stage	11.647
	SRR8316901	Third green stage	10.679
	SRR8316898	Complete white stage	2.070
	SRR8316899	Complete white stage	21.986
	SRR8316903	Complete white stage	6.414
	SRR8316902	Silver flowering stage	1.171
	SRR8316904	Silver flowering stage	1.474
	SRR8316905	Silver flowering stage	0.743
	SRR8316906	Gold flowering stage	3.046
	SRR8316907	Gold flowering stage	1.612
	SRR8316908	Gold flowering stage	5.902
SRP132670	SRR6706286	Control	8.726
	SRR6706287	Light intensity 50%	9.492
	SRR6706288	Light intensity 20%	10.110
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.444
	CNS0095593	Slightly white alabastrum(diploid) 2	13.911
	CNS0095594	Slightly white alabastrum(diploid) 3	13.884
	CNS0095595	Whole white alabastrum(diploid) 2	13.373
	CNS0095596	Whole white alabastrum(diploid) 3	6.282
	CNS0095597	Whole white alabastrum(diploid) 4	10.398
	CNS0095598	Silvery flower (diploied) 1	25.108
	CNS0095599	Silvery flower (diploied) 2	21.546
	CNS0095600	Silvery flower (diploied) 3	9.154
	CNS0095601	Golden flower (diploid) 1	17.634
	CNS0095602	Golden flower (diploid) 2	14.129
	CNS0095603	Golden flower (diploid) 3	11.467
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.643
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.555
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.248
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.053
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.572
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.575
	CNS0095610	Silvery flower (tetraploid) 1	6.924
	CNS0095611	Silvery flower (tetraploid) 2	10.004
	CNS0095612	Silvery flower (tetraploid) 3	6.420
	CNS0095613	Golden flower (tetraploid) 1	4.535
	CNS0095614	Golden flower (tetraploid) 2	7.070
	CNS0095615	Golden flower (tetraploid) 3	3.172
CRA001975	CRR073297	Stem 1	11.714
	CRR073298	Stem 2	10.980
	CRR073299	Stem 3	11.732
	CRR073300	Leaf 1	9.203
	CRR073301	Leaf 2	6.410
	CRR073302	Leaf 3	7.694
	CRR073303	Juvenile bud 1	7.572
	CRR073304	Juvenile bud 2	2.914
	CRR073305	Juvenile bud 3	9.631
	CRR073306	Third green 1	0.176
	CRR073307	Third green 2	0.831
	CRR073308	Third green 3	1.847
	CRR073309	Second white 1	0.629
	CRR073310	Second white 2	0.437
	CRR073311	Second white 3	0.330
	CRR073312	Silver flowering 1	0.942
	CRR073313	Silver flowering 2	0.203
	CRR073314	Silver flowering 3	0.822
	CRR073315	Gold flowering 1	3.583
	CRR073316	Gold flowering 2	6.674
	CRR073317	Gold flowering 3	7.020
	CRR073318	Tawny withering 1	19.286
	CRR073319	Tawny withering 2	20.965
	CRR073320	Tawny withering 3	25.044