Gene detail

Detail information of GWHGAAZE031726

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002835674.1	1.6633E-131	hypothetical protein [Tuber melanosporum Mel28]
COG	YP_006722730.1	4E-88	Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
Swissprot	tr\|O19908\|GLMS_CYACA	1E-48	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000255\|HAMAP-Rule:MF_00164}
trEMBL	tr\|I1IUR9\|I1IUR9_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G43640.1}
TAIR10	AT3G24090.1	5E-100	glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	64083514	64091175	-
GWHAAZE00000009	mRNA	64083514	64091175	-
GWHAAZE00000009	exon	64090971	64091175	-
GWHAAZE00000009	exon	64088414	64088586	-
GWHAAZE00000009	exon	64088045	64088150	-
GWHAAZE00000009	exon	64087481	64087626	-
GWHAAZE00000009	exon	64084435	64084738	-
GWHAAZE00000009	exon	64083679	64083929	-
GWHAAZE00000009	exon	64083514	64083603	-
GWHAAZE00000009	CDS	64090971	64091175	-
GWHAAZE00000009	CDS	64088414	64088586	-
GWHAAZE00000009	CDS	64088045	64088150	-
GWHAAZE00000009	CDS	64087481	64087626	-
GWHAAZE00000009	CDS	64084435	64084738	-
GWHAAZE00000009	CDS	64083679	64083929	-
GWHAAZE00000009	CDS	64083514	64083603	-

Transcript Sequence
>GWHTAAZE031764 ATGTGTGGGATATTTGCATATTTGAATTACAAAATCAACAGAGACCGACGTTACATCCTTCAACTCCTCTTCAATGCCTTGACCCGTTTGGAGTACAGAGGATACGATTCCGCCGGCATTTCCATCGATTCTTCTTCTTCCATTTCTACACTCGTCTTTCGTCAAGAAGGCAACATTCAATCCCTCATAAATTCTGTCCACAAAGATGTTGCTAATACAAATTTAAATTTAGAGGAATTATTTTCTGTTCATGCTGGAATAGCCCATACCCGATGGGTAACTCATGGGGAACCAGCTCCAAGGAATTGTCACCCTCAATCCTCGGGCCCTGGAAATGAATTTGTGGTTGTTCACAATGGAGTCATCACTAATTATGAGGTGTTAAAGGAAACGCTAATTCAACATGGCTTCATCTTTGAATCTGAAACAGATACGGAAGTAATTCCAAAGCTTGCAAAATTTGTTTTTGACAAAGCTCATGAAGGAGATCATACCATTACATTTAGTCAGGTTGTGCTTGAAGTTATGAGGCACCTAGAAGGCGCTTATGCTCTCATTTTTAAAAGCCGACATTACCCAAATGAATTGATTACTTGCAAACGTGGTAGTCCATTGCTTTTGGGCATAAAACTTGCAAGGCCTGCTTCTGTGCAACGAGCGTTGTCAATTCTTGAGAAGGAGGTTGAGCAAATAAATAAAGGAGAATATGAGCATTATATGCAAAAGGAAATTCAAGAACAACCTGAGTCTCTAACAACAACAATGCGAGGGAGGCTTATACGAGGAGATTCAACGAAGGCCAAGACTGTCCTTTTGGGCGGACTAAAGGATCACCTCAAAACTATTAGTAGAAGCAGACGTATTGTTTTTATTGGTTGCAGTACAAGCTATAATGCTGCTTTAGCTTCAAGACCTATTCTTGAAGAACTCTCTGGTATTCCTGCTACAATAGAGATTGCCAGTGATTTGTTAGATAGGCAAGGCCCAATATACAGAGAAGATACAGTTGTTTTTGTTAGTCAGTCTGGTGAAACTGCGGACACTTTAAAAGCATTAGAATATGCATTAAAAAATGGTGCATTATGTGTTGGCATTACGAACACAGTTAGCAGTGCAATTGCTAGGAACACACACTGCGGTGTTCATATAAATGCTGGCTGTGAGATTGGTGTGGCTAGTACCAAGGCATGTACGAGTCAAATAGTCGTGATGGCTATGTTGGCTTTAGCGATTGGCAGTGACACAATATCTATCAAGCAAGAAGAGAAGCTATAA

Network for GWHGAAZE031726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13522.7	GATase_6	81	198	4.50E-14
PF01380.23	SIS	282	409	4.40E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00820	glmS, GFPT	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:1901135	biological_process	carbohydrate derivative metabolic process
GO:0097367	molecular_function	carbohydrate derivative binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.347
	SRR3591706	second leaf	2.284
	SRR3591707	mature leaf	0.243
	SRR3591708	Shoot apex	2.048
	SRR3591709	Stem	0.906
	SRR3591710	White floral bud	1.380
	SRR3591711	White flower	1.113
	SRR3591712	Green floral bud	2.213
	SRR3591713	Yellow flower	0.262
SRP173429	SRR8316895	Juvenile bud stage	1.584
	SRR8316896	Juvenile bud stage	1.630
	SRR8316897	Juvenile bud stage	0.628
	SRR8316894	Third green stage	0.814
	SRR8316900	Third green stage	1.395
	SRR8316901	Third green stage	1.309
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.803
	SRR8316903	Complete white stage	0.059
	SRR8316902	Silver flowering stage	0.047
	SRR8316904	Silver flowering stage	0.162
	SRR8316905	Silver flowering stage	0.027
	SRR8316906	Gold flowering stage	0.251
	SRR8316907	Gold flowering stage	0.050
	SRR8316908	Gold flowering stage	0.110
SRP132670	SRR6706286	Control	1.657
	SRR6706287	Light intensity 50%	1.306
	SRR6706288	Light intensity 20%	1.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.425
	CNS0095593	Slightly white alabastrum(diploid) 2	1.397
	CNS0095594	Slightly white alabastrum(diploid) 3	0.399
	CNS0095595	Whole white alabastrum(diploid) 2	1.515
	CNS0095596	Whole white alabastrum(diploid) 3	1.114
	CNS0095597	Whole white alabastrum(diploid) 4	0.792
	CNS0095598	Silvery flower (diploied) 1	0.345
	CNS0095599	Silvery flower (diploied) 2	0.998
	CNS0095600	Silvery flower (diploied) 3	0.263
	CNS0095601	Golden flower (diploid) 1	1.031
	CNS0095602	Golden flower (diploid) 2	0.419
	CNS0095603	Golden flower (diploid) 3	0.379
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.515
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.510
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.227
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.783
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.302
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.578
	CNS0095610	Silvery flower (tetraploid) 1	0.355
	CNS0095611	Silvery flower (tetraploid) 2	0.656
	CNS0095612	Silvery flower (tetraploid) 3	0.335
	CNS0095613	Golden flower (tetraploid) 1	0.355
	CNS0095614	Golden flower (tetraploid) 2	0.160
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.492
	CRR073298	Stem 2	1.188
	CRR073299	Stem 3	0.282
	CRR073300	Leaf 1	0.660
	CRR073301	Leaf 2	0.381
	CRR073302	Leaf 3	0.176
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.176
	CRR073305	Juvenile bud 3	0.171
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.196
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.002
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.398
	CRR073316	Gold flowering 2	0.429
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.265
	CRR073319	Tawny withering 2	0.080
	CRR073320	Tawny withering 3	0.000