Detail information of GWHGAAZE031644


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006369457.16.9435E-143hypothetical protein POPTR_0001s23620g, partial [Populus trichocarpa]
COGYP_003321595.19E-40Zeaxanthin epoxidase
Swissprottr|Q0JCU7|ZEP_ORYSJ6E-105Zeaxanthin epoxidase, chloroplastic (Precursor)
trEMBLtr|U5GU94|U5GU94_POPTR3E-143Uncharacterized protein {ECO:0000313|EMBL:ERP66026.1} (Fragment)
TAIR10AT5G67030.19E-82zeaxanthin epoxidase (ZEP) (ABA1)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6235235062355641-
GWHAAZE00000009mRNA6235235062355641-
GWHAAZE00000009exon6235235062352355-
GWHAAZE00000009exon6235269662352810-
GWHAAZE00000009exon6235322562353316-
GWHAAZE00000009exon6235372962353866-
GWHAAZE00000009exon6235420362354374-
GWHAAZE00000009exon6235456062354672-
GWHAAZE00000009exon6235480262354909-
GWHAAZE00000009exon6235545662355641-
GWHAAZE00000009CDS6235545662355641-
GWHAAZE00000009CDS6235480262354909-
GWHAAZE00000009CDS6235456062354672-
GWHAAZE00000009CDS6235420362354374-
GWHAAZE00000009CDS6235372962353866-
GWHAAZE00000009CDS6235322562353316-
GWHAAZE00000009CDS6235269662352810-
GWHAAZE00000009CDS6235235062352355-
Transcript Sequence

Network for GWHGAAZE031644

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01494.20FAD_binding_32082533.90E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09838ZEP, ABA1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0071949molecular_functionFAD binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.460
SRR3591706second leaf5.805
SRR3591707mature leaf4.599
SRR3591708Shoot apex7.568
SRR3591709Stem15.600
SRR3591710White floral bud9.182
SRR3591711White flower8.696
SRR3591712Green floral bud12.887
SRR3591713Yellow flower4.160
SRP173429 SRR8316895Juvenile bud stage 8.454
SRR8316896Juvenile bud stage 11.105
SRR8316897Juvenile bud stage 5.565
SRR8316894Third green stage 5.972
SRR8316900Third green stage 17.474
SRR8316901Third green stage 18.759
SRR8316898Complete white stage 5.598
SRR8316899Complete white stage 20.451
SRR8316903Complete white stage 11.588
SRR8316902Silver flowering stage4.391
SRR8316904Silver flowering stage5.763
SRR8316905Silver flowering stage3.129
SRR8316906Gold flowering stage 8.333
SRR8316907Gold flowering stage 10.446
SRR8316908Gold flowering stage 7.741
SRP132670SRR6706286Control12.698
SRR6706287Light intensity 50%14.073
SRR6706288Light intensity 20%15.126
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.721
CNS0095593Slightly white alabastrum(diploid) 212.590
CNS0095594Slightly white alabastrum(diploid) 310.577
CNS0095595Whole white alabastrum(diploid) 29.878
CNS0095596Whole white alabastrum(diploid) 310.545
CNS0095597Whole white alabastrum(diploid) 413.036
CNS0095598Silvery flower (diploied) 118.038
CNS0095599Silvery flower (diploied) 216.318
CNS0095600Silvery flower (diploied) 312.593
CNS0095601Golden flower (diploid) 115.016
CNS0095602Golden flower (diploid) 211.047
CNS0095603Golden flower (diploid) 311.350
CNS0095604Slightly white alabastrum(tetraploid) 111.410
CNS0095605Slightly white alabastrum(tetraploid) 29.149
CNS0095606Slightly white alabastrum(tetraploid) 316.650
CNS0095607Whole white alabastrum(tetraploid) 18.654
CNS0095608Whole white alabastrum(tetraploid) 26.188
CNS0095609Whole white alabastrum(tetraploid) 314.529
CNS0095610Silvery flower (tetraploid) 18.799
CNS0095611Silvery flower (tetraploid) 210.490
CNS0095612Silvery flower (tetraploid) 36.923
CNS0095613Golden flower (tetraploid) 15.093
CNS0095614Golden flower (tetraploid) 25.967
CNS0095615Golden flower (tetraploid) 32.873
CRA001975CRR073297Stem 113.761
CRR073298Stem 29.484
CRR073299Stem 38.804
CRR073300Leaf 113.994
CRR073301Leaf 213.243
CRR073302Leaf 37.637
CRR073303Juvenile bud 111.052
CRR073304Juvenile bud 28.906
CRR073305Juvenile bud 312.669
CRR073306Third green 12.942
CRR073307Third green 22.042
CRR073308Third green 32.333
CRR073309Second white 12.270
CRR073310Second white 22.876
CRR073311Second white 31.437
CRR073312Silver flowering 10.719
CRR073313Silver flowering 20.619
CRR073314Silver flowering 30.794
CRR073315Gold flowering 13.000
CRR073316Gold flowering 23.384
CRR073317Gold flowering 32.101
CRR073318Tawny withering 17.553
CRR073319Tawny withering 28.428
CRR073320Tawny withering 35.932