Gene detail

Detail information of GWHGAAZE031505

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010266545.1	0	PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Nelumbo nucifera]
Swissprot	tr\|Q8S3N1\|SINA5_ARATH	0	E3 ubiquitin-protein ligase SINAT5
trEMBL	tr\|V7AV92\|V7AV92_PHAVU	0	E3 ubiquitin-protein ligase {ECO:0000256\|RuleBase:RU201113}
TAIR10	AT3G61790.1	1E-151	Protein with RING/U-box and TRAF-like domains

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59877309	59880559	-
GWHAAZE00000009	mRNA	59877309	59880559	-
GWHAAZE00000009	exon	59877309	59877671	-
GWHAAZE00000009	exon	59878827	59879213	-
GWHAAZE00000009	exon	59880395	59880559	-
GWHAAZE00000009	CDS	59880395	59880559	-
GWHAAZE00000009	CDS	59878827	59879213	-
GWHAAZE00000009	CDS	59877309	59877671	-

Transcript Sequence
>GWHTAAZE031541 ATGGAAGAGGATAATGAGATCCATCATCATCATCATCACTCTCAGTTTTCATCTTCAAAGCCTCATAATAACCCTATCCCCTCAAGTATTCATCCAACTACTAGTGTACATGAACTTCTCGAATGCCCTGTTTGCACCAATTCAATGTACCCTCCTATTCATCAGTGTCACAACGGGCACACACTTTGTTCCACCTGTAAAACAAGGGTACACAATCGGTGTCCAACTTGTAGACAAGAGCTTGGTGATATAAGGTGTCTGGCATTAGAAAAAGTGGCCGAATCACTTGAGCTTCCTTGCAAGTATTGCTCTCTTGGATGCTCCGAGATCTTTCCCTACTACAGCAAGCTTAAACACGAGTCCCTATGTAACTTTAGACCGTTCAACTGCCCTTATGCTGGATCTGAGTGCTCAGTTGTTGGTGACATTCCATTTCTTGTCGCTCATCTGAGGGATGATCACAAGGTAGACATGCACTCCGGATGCACATTCAACCATCGTTATGTCAAATCTAATCCACGTGAAGTAGAAAACGCCACCTGGATGCTAACAGTCTTCAATTGCTTCGGGCAGTACTTTTGTCTTCATTTTGAAGCATTTCAACTGGGCATGGCGCCTGTTTACATGGCGTTTCTTCGGTTCATGGGGGACGAGTCCGAGGCTAGAAACTACACATACAGCTTAGAAGTAGGGGGTAACGGCCGTAAACTCGTATGGGAGGGTACCCCAAGAAGTGTAAGGGACAGTCACAAGAAAGTTAGGGATAGCCACGACGGACTCATTATACAAAGAAATATGGCGCTGTTCTTTTCTGGAGGAGATAGGAAAGAGCTCAAGTTGAGAGTTACAGGTCGGATTTGGAAGGAACAACCAAACCCGGATGGAGGAGCCTGTATACCCAATCTCTGTAGTTAG

Network for GWHGAAZE031505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03145.17	Sina	84	283	4.80E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04506	SIAH1	Ubiquitin mediated proteolysis	map04120
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0007275	biological_process	multicellular organism development
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.546
	SRR3591706	second leaf	17.195
	SRR3591707	mature leaf	10.869
	SRR3591708	Shoot apex	25.672
	SRR3591709	Stem	35.255
	SRR3591710	White floral bud	30.688
	SRR3591711	White flower	23.505
	SRR3591712	Green floral bud	36.556
	SRR3591713	Yellow flower	20.927
SRP173429	SRR8316895	Juvenile bud stage	15.733
	SRR8316896	Juvenile bud stage	20.530
	SRR8316897	Juvenile bud stage	8.565
	SRR8316894	Third green stage	9.894
	SRR8316900	Third green stage	23.955
	SRR8316901	Third green stage	25.387
	SRR8316898	Complete white stage	13.536
	SRR8316899	Complete white stage	35.086
	SRR8316903	Complete white stage	20.330
	SRR8316902	Silver flowering stage	10.436
	SRR8316904	Silver flowering stage	13.699
	SRR8316905	Silver flowering stage	7.305
	SRR8316906	Gold flowering stage	26.732
	SRR8316907	Gold flowering stage	22.000
	SRR8316908	Gold flowering stage	22.476
SRP132670	SRR6706286	Control	27.366
	SRR6706287	Light intensity 50%	29.653
	SRR6706288	Light intensity 20%	31.412
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.765
	CNS0095593	Slightly white alabastrum(diploid) 2	23.950
	CNS0095594	Slightly white alabastrum(diploid) 3	21.499
	CNS0095595	Whole white alabastrum(diploid) 2	17.046
	CNS0095596	Whole white alabastrum(diploid) 3	17.527
	CNS0095597	Whole white alabastrum(diploid) 4	20.748
	CNS0095598	Silvery flower (diploied) 1	14.578
	CNS0095599	Silvery flower (diploied) 2	13.755
	CNS0095600	Silvery flower (diploied) 3	20.642
	CNS0095601	Golden flower (diploid) 1	11.211
	CNS0095602	Golden flower (diploid) 2	17.267
	CNS0095603	Golden flower (diploid) 3	19.858
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.806
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.381
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.808
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.060
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.446
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.440
	CNS0095610	Silvery flower (tetraploid) 1	20.282
	CNS0095611	Silvery flower (tetraploid) 2	16.644
	CNS0095612	Silvery flower (tetraploid) 3	20.640
	CNS0095613	Golden flower (tetraploid) 1	15.873
	CNS0095614	Golden flower (tetraploid) 2	21.704
	CNS0095615	Golden flower (tetraploid) 3	19.515
CRA001975	CRR073297	Stem 1	26.915
	CRR073298	Stem 2	24.983
	CRR073299	Stem 3	27.508
	CRR073300	Leaf 1	26.595
	CRR073301	Leaf 2	32.575
	CRR073302	Leaf 3	36.821
	CRR073303	Juvenile bud 1	31.154
	CRR073304	Juvenile bud 2	31.955
	CRR073305	Juvenile bud 3	28.846
	CRR073306	Third green 1	48.488
	CRR073307	Third green 2	38.804
	CRR073308	Third green 3	41.131
	CRR073309	Second white 1	20.295
	CRR073310	Second white 2	31.516
	CRR073311	Second white 3	20.564
	CRR073312	Silver flowering 1	20.772
	CRR073313	Silver flowering 2	18.065
	CRR073314	Silver flowering 3	17.414
	CRR073315	Gold flowering 1	13.469
	CRR073316	Gold flowering 2	12.408
	CRR073317	Gold flowering 3	9.443
	CRR073318	Tawny withering 1	36.276
	CRR073319	Tawny withering 2	30.145
	CRR073320	Tawny withering 3	40.510