Gene detail

Detail information of GWHGAAZE031459

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276685.3	0	PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Vitis vinifera]
COG	YP_007092635.1	7E-13	WD-40 repeat-containing protein
Swissprot	tr\|Q9SYX2\|SPA1_ARATH	0	Protein SUPPRESSOR OF PHYA-105 1
trEMBL	tr\|F6I6A3\|F6I6A3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62499.1}
TAIR10	AT2G46340.1	0	SPA (suppressor of phyA-105) protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59206101	59213761	+
GWHAAZE00000009	mRNA	59206101	59213761	+
GWHAAZE00000009	exon	59206101	59207294	+
GWHAAZE00000009	exon	59207984	59208141	+
GWHAAZE00000009	exon	59209946	59210726	+
GWHAAZE00000009	exon	59211564	59211710	+
GWHAAZE00000009	exon	59212384	59212525	+
GWHAAZE00000009	exon	59212603	59212700	+
GWHAAZE00000009	exon	59213089	59213148	+
GWHAAZE00000009	exon	59213567	59213761	+
GWHAAZE00000009	CDS	59206101	59207294	+
GWHAAZE00000009	CDS	59207984	59208141	+
GWHAAZE00000009	CDS	59209946	59210726	+
GWHAAZE00000009	CDS	59211564	59211710	+
GWHAAZE00000009	CDS	59212384	59212525	+
GWHAAZE00000009	CDS	59212603	59212700	+
GWHAAZE00000009	CDS	59213089	59213148	+
GWHAAZE00000009	CDS	59213567	59213761	+

Transcript Sequence
>GWHTAAZE031495 ATGGGACCCACCGAGGAGGAAATAGCCACAAATGAACTAGCATCGAGTGCAGAACTTAAGACGAATGAGTTCCCCAAAAGTTCAGCCCCAGTTTACACAGACATGTTAGAGGATAATATTTTAAATAGAAGCAAAATGTCATTAGCAGGTTATGAATTTTCTTGCACAAGCCCTTTCTCCACTAGCATTGCAGGTCCAATGGTCGAAGAATTGACTGTGAGAAATTATAAAATCCCAGACTCATCGTTATTCAGCAGTTCAATTGGTAGAGAAGAATTGCATTGTGGGCAAAGCCACTGGCAACATTTGTGGGCTCAAAGGAACCTTCATGCAGATTATATATTTGGCGATGAGAACCCGATGCGATTGAGCCCAAGAAAATTGCCCCGTGGCCTTCAAGATAATAAACCATGGTCTAGTAAGCAAGACAATCAAGATTTAGATGGTATGAATGCAAATTTGATAAATAATTACAATAAGATCCCCTCTTCGTCTAGCTTTTCTCAGTTTTTTGTGAAGCAATCTTCGAAGGGCAAAGGGGTTCTATCCAAAAGCCCAGAAACTTTTGCTGATTTTAGAGCTGCTGCCATGGCCAAAAGTAAAGAGAAAAGGAGTGTACATAATAAAGCAGCTTCTGACGCGTCAACGAAATCAACGGCTAAAATTGAATCATGTGTTGGTGGGATCAACTTGAGGGAGTGGTTGACACCCATGCGGGGTGAAAAGAATAAAGTTGAGAGGCTGCATGTGTTTAGGCAGATTGTGCAGTTGGTGGATTTTGCACACTCTCAAGGAGTTTTTTTGCGCCACTTACGACCGTCCTTTTTCACTGTATGGCCATCAAATAAGGTTAAATATGTTGGGTCATCAACTCAAATGGAGAAAATGAGTATTATGAATCAGAATATAAATCGGAAAAGGCCATTGGAGCAAGAAATGAATGAATATAGTAAACTGGGAGTGAAGCAGCAGAAGATCGAGGATATGAAATTGTTCAGATATGGAATGAGTAGTGAGGGTATGGAAGAGATTGAAAGCAAAATTAGTGGTCAACAAGATTTAGATTATACTAAACAACAATCAAAATCTGTGATTGTTCAATTGGAGAAGAAGTGGTATGCTAGTCCAGAGGAGCTCAGTGGGAGGTGCCTTTTATCATCAAATATCTACAGTCTTGGGGTTCTCCTATTTGAGTTGCTCTGCTGTTTTGAGACAATCGAGGCCCATGCTGCAGCAATGTTGGAATTGCGCCAACGGATTCTTACACCAAATTTTCTTTCAGAGCACCCGAAGGAAGCTGGCTATTGTCTTTGGCTGCTTCACCCCGATCCTTCTTCTCGTCCAACAACAAGGGAGATCCTACAGTCCGAAATTGCATGTAAATCTGAAGAGTTGTACTCACGAGGTGATTTGTTACCTATCAATGAGGATGATGAAGATGAATCAAATCTTTTAGATTACTTTTTACTTTCAATGAAAGAAACTAAGCAGAAACATGCCTCGGAGCTACTAGAAAAGATAAGGTGCTTGGAAGAAGATATCAAGGAGATTGAAAGAAGGCATTTGTTGAAAATATCCTCCGATTGTGGGGCCCATCCTAGAGATAATATATGTTCCACAACATCAGTTTCCGTGTCTAATTTGTTCAAGGCAAGATTGACGAAGAATATGAGCAAACTTGAAAATGCATATTTCTACAAGAGATCCGAAATTCAATCTACGGAAACCACTTCCCTGGACCGATCGGATAAAGAATTGCTAAGGACTCATTTGATCAAGAAGACTAGCATGGAAAGGAAACCCGTTGATTGCCTTACGGATTTTTTCGAAGGCGTATTTAAGTTTGCTCGGTATAGTAGATTTGAGGTGTGTGGAACATTAAGAAACAGTGACCTACTAAATTCTGCAAATGTGATTTGCTCTTTGTCCTTTGACCGTGATGAGGACTACATTGCTGCTGCTGGGGTCTCGAAGAAAATCAAAATTTTCGAGTTTGCTTCGCTTATGAACGATTGTGTTGATATTCATTATCCAGTGGTTGAGATGTTGAACAAATCAAAGCTTAGCTGCGTTTGTTGGAACAAGTACATCAAGAACTATTTGGCTTCAACTGATTACGATGGTGTGGTTCAGATGTGGGATGCAAATACTGGTCAAGGATTTTCTCAATATGTAGAACACCAGAAAAGGGCTTGGTCTGTTGACTTTTCTCAAGTTGATCCAATGAAGTTTGCCAGTGGAAGTGATGATTGTTCTGTGAAACTGTGGAGCATTAATGAGAAGCATTCTATTGGCAATATCCAGAACCCAGCCAACGTTTGCTGTGTTCAGTTCTCTCCTTACTCCTCGCATCTATTGGCCTTTGGATGTGCAGATTACAAAATCTATGGCTATGATCTTCGACATACTAGAATCCCATGGTATAACACTATTAAGCTTTGGGACCTCAACAAAACCAACTTAGAAGGGTTGTCCCCCAAAGCTTGTACCTCCAGCTTTAGTGGTCATACTAATGAGAAGAATTTTGTTGGTTTATCTGTTTTCGATGGATACATAGCTTGCGGTTCTGAAACTAACGAGGTTTATGCTTATTATAGATCTCTGCCAATGCCAATCACTTCTCACAAATTCGGATGTGTTGATCCTCTTTCTGGACAGGAGGTTAATGATAGTAGTAATGGGCAATTTGTTTCAAGTGTGTGTTGGAGAGGAAAATCAAACATGGTTGTTGCTGCTAATTCGAGGGGAAATATAAAGCTACTGCAGATGGTTTGA

Network for GWHGAAZE031459

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	724	757	0.045

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K16240	SPA1	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.795
	SRR3591706	second leaf	28.282
	SRR3591707	mature leaf	50.174
	SRR3591708	Shoot apex	21.948
	SRR3591709	Stem	17.873
	SRR3591710	White floral bud	23.630
	SRR3591711	White flower	53.884
	SRR3591712	Green floral bud	8.246
	SRR3591713	Yellow flower	41.115
SRP173429	SRR8316895	Juvenile bud stage	12.403
	SRR8316896	Juvenile bud stage	13.848
	SRR8316897	Juvenile bud stage	6.752
	SRR8316894	Third green stage	5.679
	SRR8316900	Third green stage	12.292
	SRR8316901	Third green stage	11.160
	SRR8316898	Complete white stage	14.779
	SRR8316899	Complete white stage	22.350
	SRR8316903	Complete white stage	25.298
	SRR8316902	Silver flowering stage	37.904
	SRR8316904	Silver flowering stage	74.077
	SRR8316905	Silver flowering stage	31.961
	SRR8316906	Gold flowering stage	116.238
	SRR8316907	Gold flowering stage	91.206
	SRR8316908	Gold flowering stage	111.508
SRP132670	SRR6706286	Control	12.117
	SRR6706287	Light intensity 50%	11.777
	SRR6706288	Light intensity 20%	11.918
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.166
	CNS0095593	Slightly white alabastrum(diploid) 2	4.766
	CNS0095594	Slightly white alabastrum(diploid) 3	6.656
	CNS0095595	Whole white alabastrum(diploid) 2	5.961
	CNS0095596	Whole white alabastrum(diploid) 3	4.047
	CNS0095597	Whole white alabastrum(diploid) 4	5.408
	CNS0095598	Silvery flower (diploied) 1	21.623
	CNS0095599	Silvery flower (diploied) 2	21.808
	CNS0095600	Silvery flower (diploied) 3	82.662
	CNS0095601	Golden flower (diploid) 1	25.046
	CNS0095602	Golden flower (diploid) 2	68.477
	CNS0095603	Golden flower (diploid) 3	67.086
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.298
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.500
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.584
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.028
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.024
	CNS0095610	Silvery flower (tetraploid) 1	82.280
	CNS0095611	Silvery flower (tetraploid) 2	82.998
	CNS0095612	Silvery flower (tetraploid) 3	211.738
	CNS0095613	Golden flower (tetraploid) 1	75.688
	CNS0095614	Golden flower (tetraploid) 2	88.295
	CNS0095615	Golden flower (tetraploid) 3	166.757
CRA001975	CRR073297	Stem 1	7.420
	CRR073298	Stem 2	6.639
	CRR073299	Stem 3	3.390
	CRR073300	Leaf 1	7.527
	CRR073301	Leaf 2	6.512
	CRR073302	Leaf 3	5.291
	CRR073303	Juvenile bud 1	6.384
	CRR073304	Juvenile bud 2	7.694
	CRR073305	Juvenile bud 3	8.625
	CRR073306	Third green 1	125.895
	CRR073307	Third green 2	70.384
	CRR073308	Third green 3	101.362
	CRR073309	Second white 1	107.451
	CRR073310	Second white 2	185.761
	CRR073311	Second white 3	173.479
	CRR073312	Silver flowering 1	85.011
	CRR073313	Silver flowering 2	73.006
	CRR073314	Silver flowering 3	79.057
	CRR073315	Gold flowering 1	8.294
	CRR073316	Gold flowering 2	15.372
	CRR073317	Gold flowering 3	4.556
	CRR073318	Tawny withering 1	3.558
	CRR073319	Tawny withering 2	2.536
	CRR073320	Tawny withering 3	2.924