Detail information of GWHGAAZE031373


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009762122.13.0842E-118PREDICTED: pollen-specific protein SF3-like [Nicotiana sylvestris]
Swissprottr|O80839|PLI2A_ARATH2E-103LIM domain-containing protein PLIM2a {ECO:0000305}
trEMBLtr|B1PVT0|B1PVT0_TOBAC1E-118LIM domain protein 2b {ECO:0000313|EMBL:ACB05475.1}
TAIR10AT2G45800.17E-72GATA type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5804062758043016-
GWHAAZE00000009mRNA5804062758043016-
GWHAAZE00000009exon5804288258043016-
GWHAAZE00000009exon5804263158042730-
GWHAAZE00000009exon5804220858042233-
GWHAAZE00000009exon5804189258041981-
GWHAAZE00000009exon5804062758040984-
GWHAAZE00000009CDS5804288258043016-
GWHAAZE00000009CDS5804263158042730-
GWHAAZE00000009CDS5804220858042233-
GWHAAZE00000009CDS5804189258041981-
GWHAAZE00000009CDS5804071258040984-
GWHAAZE00000009three_prime_UTR5804062758040711-
Transcript Sequence

Network for GWHGAAZE031373

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM10652.20E-12
PF00412.23LIM1051601.90E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLIM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.178
SRR3591706second leaf0.000
SRR3591707mature leaf0.022
SRR3591708Shoot apex0.191
SRR3591709Stem1.498
SRR3591710White floral bud141.757
SRR3591711White flower5.737
SRR3591712Green floral bud226.302
SRR3591713Yellow flower2.937
SRP173429 SRR8316895Juvenile bud stage 30.586
SRR8316896Juvenile bud stage 92.424
SRR8316897Juvenile bud stage 64.761
SRR8316894Third green stage 35.411
SRR8316900Third green stage 164.004
SRR8316901Third green stage 165.603
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.778
SRR8316903Complete white stage 0.282
SRR8316902Silver flowering stage1.291
SRR8316904Silver flowering stage4.732
SRR8316905Silver flowering stage0.979
SRR8316906Gold flowering stage 0.297
SRR8316907Gold flowering stage 0.188
SRR8316908Gold flowering stage 0.175
SRP132670SRR6706286Control61.521
SRR6706287Light intensity 50%68.096
SRR6706288Light intensity 20%59.923
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1191.504
CNS0095593Slightly white alabastrum(diploid) 2139.159
CNS0095594Slightly white alabastrum(diploid) 3218.457
CNS0095595Whole white alabastrum(diploid) 2239.215
CNS0095596Whole white alabastrum(diploid) 3326.839
CNS0095597Whole white alabastrum(diploid) 4259.499
CNS0095598Silvery flower (diploied) 16.582
CNS0095599Silvery flower (diploied) 222.250
CNS0095600Silvery flower (diploied) 35.954
CNS0095601Golden flower (diploid) 18.281
CNS0095602Golden flower (diploid) 23.665
CNS0095603Golden flower (diploid) 34.507
CNS0095604Slightly white alabastrum(tetraploid) 1317.256
CNS0095605Slightly white alabastrum(tetraploid) 2345.399
CNS0095606Slightly white alabastrum(tetraploid) 30.639
CNS0095607Whole white alabastrum(tetraploid) 1463.462
CNS0095608Whole white alabastrum(tetraploid) 2485.638
CNS0095609Whole white alabastrum(tetraploid) 3246.109
CNS0095610Silvery flower (tetraploid) 12.039
CNS0095611Silvery flower (tetraploid) 211.148
CNS0095612Silvery flower (tetraploid) 332.922
CNS0095613Golden flower (tetraploid) 14.496
CNS0095614Golden flower (tetraploid) 20.697
CNS0095615Golden flower (tetraploid) 319.958
CRA001975CRR073297Stem 169.008
CRR073298Stem 270.873
CRR073299Stem 340.894
CRR073300Leaf 1180.300
CRR073301Leaf 2161.154
CRR073302Leaf 3124.600
CRR073303Juvenile bud 1156.761
CRR073304Juvenile bud 2220.725
CRR073305Juvenile bud 310.701
CRR073306Third green 177.734
CRR073307Third green 2125.712
CRR073308Third green 392.600
CRR073309Second white 17.510
CRR073310Second white 211.878
CRR073311Second white 313.458
CRR073312Silver flowering 174.393
CRR073313Silver flowering 281.997
CRR073314Silver flowering 343.592
CRR073315Gold flowering 187.388
CRR073316Gold flowering 216.655
CRR073317Gold flowering 358.388
CRR073318Tawny withering 173.176
CRR073319Tawny withering 268.689
CRR073320Tawny withering 367.441