Gene detail

Detail information of GWHGAAZE031349

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008232866.1	0	PREDICTED: uncharacterized protein LOC103331962 isoform X1 [Prunus mume]
Swissprot	tr\|Q9XI84\|RBCMT_ARATH	0.000002	[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|M5WZ93\|M5WZ93_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19127.1}
TAIR10	AT1G01920.2	1E-177	SET domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57629589	57635702	+
GWHAAZE00000009	mRNA	57629589	57635702	+
GWHAAZE00000009	exon	57629589	57629639	+
GWHAAZE00000009	exon	57629758	57629854	+
GWHAAZE00000009	exon	57630446	57630620	+
GWHAAZE00000009	exon	57630711	57630816	+
GWHAAZE00000009	exon	57630972	57631054	+
GWHAAZE00000009	exon	57631743	57631954	+
GWHAAZE00000009	exon	57632091	57632198	+
GWHAAZE00000009	exon	57633200	57633280	+
GWHAAZE00000009	exon	57633451	57633515	+
GWHAAZE00000009	exon	57633862	57633918	+
GWHAAZE00000009	exon	57634113	57634184	+
GWHAAZE00000009	exon	57634352	57634378	+
GWHAAZE00000009	exon	57634941	57635189	+
GWHAAZE00000009	exon	57635583	57635702	+
GWHAAZE00000009	CDS	57629589	57629639	+
GWHAAZE00000009	CDS	57629758	57629854	+
GWHAAZE00000009	CDS	57630446	57630620	+
GWHAAZE00000009	CDS	57630711	57630816	+
GWHAAZE00000009	CDS	57630972	57631054	+
GWHAAZE00000009	CDS	57631743	57631954	+
GWHAAZE00000009	CDS	57632091	57632198	+
GWHAAZE00000009	CDS	57633200	57633280	+
GWHAAZE00000009	CDS	57633451	57633515	+
GWHAAZE00000009	CDS	57633862	57633918	+
GWHAAZE00000009	CDS	57634113	57634184	+
GWHAAZE00000009	CDS	57634352	57634378	+
GWHAAZE00000009	CDS	57634941	57635189	+
GWHAAZE00000009	CDS	57635583	57635702	+

Transcript Sequence
>GWHTAAZE031383 ATGGAGAATCCAGAAGAAGCCAAGCTCGAATTATTCCTCCAGTGGTTACAGGTGAATCGAGTCGAACTACGTGGTTGCAATATCAAGTACTGCGATTCAAAGAAAGGGTTTGGTATCTTTTCATCTGACGAAACTTCCTCATCTGATGGGATTCTGCTAGTGGTTCCACTAGACTTAGCTATAACTCCAATGAGGGTACTCCAAGATCCTACCCTGGGACCCGAGTGTTCGAAAATGCTTGAAGAAGGGGAAGTAGATGACAGATTCATGCTGATTTTATTTCTAACTGTGGAACGTCTACGGAAGAACTCCTCTTGGAAACCGTACCTCGATATGCTTCCAACCGCATTCGGAAATCCACTCTGGTTTACAGATTATGAGATTTCGGAGCTGAAGGGAACCACGTTGTATCGAGCGACTGAGCTGCAGAAGAAAAAGTTGCAGGATTTGTATGAGCATAAAGTGAGGAGTTTGGTGCAAAAGCTATTGATTCTTGAAGGAGATTCAGAAAGGAATTTGAGTTTAGCAACTGATAGTTTTTGCAATTGGCAAAATGATAGGGCTAATTCCATATTTTGGACTCGTGCTCTAAATATTCCCCTTCCCCGTTCTTTGGTATTTCCGCACGTTCAAGAAGCGCAAGAGAGCACCTGTTCAAGCTCCTCTGAGGTATCTCCTTGTCATATTGCCACTGAAGAGTTGGTTAATGGGGTTGATGGAAAAATGGTTAATGGGGTTGAAAGACAGTCTGCTGGGGTCACATCCACTTCACTACAAGGAGAGACTGTTTGGGTTGAGGGTCTCGTCCCTGGCATTGATTTTTGCAACCATGATTTAAAGCCTATAGCAACATGGGAAGTTGATGAAATGGGATCAATAACCGGTGTTCCTTTCTCTATGTACCTTTTTTCTGCTGAACAAAGTCGTCATCAAATTGAGAGAGAGATATCCATCAGTTATGGTAACAAAGGAAATGAGGAACTGCTATACCTATACGGATTTGTCATTGACAATAACCCAGATGACTATCTCATGGTTCACTATCCAGCTGAAGTTATCCAGAATATTCCTTTTTCTGAGTCCAAGATACAGCTTCTTGAAGCACAGGTTGCTGGTTTGCAGAAAAATGCAATGAAATCTGAAATGAGGTGTCTTTTACCAAGAAGTTTGCTGGATCATGGTTTTTTTCCAAAATGCCCTCCACCAAAAGAAAGCAATGACAAGTGCGCATCGAGTCAGGTTTGCAATTATAGTTGGAGTGGTCAGCGCAGGACGCCTTCTTACGTAAATAATCTTGTTTTTCCTGAGGATTTCTTAACTTCTTTGAGGACTATAGCCATGCGGGAAGATGAGCTTTATCGCGTTTCATCATTACTTGAGGAGCTTGTTGATACGGGAGGGGAGAGGCAACCATCTGATAGCGAAGTCCGAGCAGCAATATGGGAGGCTTGCGGAGATTCTGGAGCTTTTCAATTGCTTGTTGACCTTCTTAACATGAAGTAA

Network for GWHGAAZE031349

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	78	297	3.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.753
	SRR3591706	second leaf	16.610
	SRR3591707	mature leaf	11.863
	SRR3591708	Shoot apex	24.100
	SRR3591709	Stem	21.231
	SRR3591710	White floral bud	14.343
	SRR3591711	White flower	15.030
	SRR3591712	Green floral bud	15.182
	SRR3591713	Yellow flower	12.883
SRP173429	SRR8316895	Juvenile bud stage	16.600
	SRR8316896	Juvenile bud stage	21.416
	SRR8316897	Juvenile bud stage	10.661
	SRR8316894	Third green stage	10.004
	SRR8316900	Third green stage	19.630
	SRR8316901	Third green stage	19.107
	SRR8316898	Complete white stage	5.367
	SRR8316899	Complete white stage	22.546
	SRR8316903	Complete white stage	10.564
	SRR8316902	Silver flowering stage	5.090
	SRR8316904	Silver flowering stage	8.798
	SRR8316905	Silver flowering stage	4.394
	SRR8316906	Gold flowering stage	12.245
	SRR8316907	Gold flowering stage	12.533
	SRR8316908	Gold flowering stage	14.436
SRP132670	SRR6706286	Control	13.849
	SRR6706287	Light intensity 50%	13.191
	SRR6706288	Light intensity 20%	15.864
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.915
	CNS0095593	Slightly white alabastrum(diploid) 2	13.380
	CNS0095594	Slightly white alabastrum(diploid) 3	13.906
	CNS0095595	Whole white alabastrum(diploid) 2	8.691
	CNS0095596	Whole white alabastrum(diploid) 3	7.585
	CNS0095597	Whole white alabastrum(diploid) 4	8.482
	CNS0095598	Silvery flower (diploied) 1	14.939
	CNS0095599	Silvery flower (diploied) 2	11.671
	CNS0095600	Silvery flower (diploied) 3	10.306
	CNS0095601	Golden flower (diploid) 1	11.121
	CNS0095602	Golden flower (diploid) 2	11.314
	CNS0095603	Golden flower (diploid) 3	9.723
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.626
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.605
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.472
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.894
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.633
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.647
	CNS0095610	Silvery flower (tetraploid) 1	13.934
	CNS0095611	Silvery flower (tetraploid) 2	13.968
	CNS0095612	Silvery flower (tetraploid) 3	9.545
	CNS0095613	Golden flower (tetraploid) 1	8.774
	CNS0095614	Golden flower (tetraploid) 2	13.450
	CNS0095615	Golden flower (tetraploid) 3	8.552
CRA001975	CRR073297	Stem 1	15.645
	CRR073298	Stem 2	15.992
	CRR073299	Stem 3	11.006
	CRR073300	Leaf 1	14.923
	CRR073301	Leaf 2	13.304
	CRR073302	Leaf 3	11.508
	CRR073303	Juvenile bud 1	9.710
	CRR073304	Juvenile bud 2	6.195
	CRR073305	Juvenile bud 3	10.048
	CRR073306	Third green 1	1.851
	CRR073307	Third green 2	1.803
	CRR073308	Third green 3	1.840
	CRR073309	Second white 1	1.774
	CRR073310	Second white 2	2.702
	CRR073311	Second white 3	2.411
	CRR073312	Silver flowering 1	1.517
	CRR073313	Silver flowering 2	1.525
	CRR073314	Silver flowering 3	1.515
	CRR073315	Gold flowering 1	5.564
	CRR073316	Gold flowering 2	7.034
	CRR073317	Gold flowering 3	4.514
	CRR073318	Tawny withering 1	8.339
	CRR073319	Tawny withering 2	8.088
	CRR073320	Tawny withering 3	9.726