Gene detail

Detail information of GWHGAAZE031297

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009628695.1	0	PREDICTED: probable pectinesterase/pectinesterase inhibitor 36 [Nicotiana tomentosiformis]
COG	YP_006407803.1	9E-56	pectin methylesterase
Swissprot	tr\|Q84R10\|PME36_ARATH	0	Pectinesterase 36 (Precursor)
trEMBL	tr\|D7U7W0\|D7U7W0_VITVI	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G60730.1	3E-169	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56783690	56787371	+
GWHAAZE00000009	mRNA	56783690	56787371	+
GWHAAZE00000009	exon	56783690	56784269	+
GWHAAZE00000009	exon	56786042	56786374	+
GWHAAZE00000009	exon	56786680	56787371	+
GWHAAZE00000009	five_prime_UTR	56783690	56783815	+
GWHAAZE00000009	CDS	56783816	56784269	+
GWHAAZE00000009	CDS	56786042	56786374	+
GWHAAZE00000009	CDS	56786680	56787371	+

Transcript Sequence
>GWHTAAZE031331 AACCAAAAACACTTGTCTACAACCTTGTATCTCTCTCTCTCTCTCTCGAAATATATATACATGTTAGTGTATTGATTCCAATATTTCTAAATTAATTTCCTCATAACCTTTTTAATTATTTCCCACATGTCTAAAAATTTGTACACCGCTTTTATTCTTCTCCTCCTCTTTGTGATTACCAATGTTACTACCACTAGTACCAACCAAGAATTCGAGGTGGTCCAAATGGCCCGGGCCGGGCTCTTGCACGCTATGGACTGGGCCCAATTCTCACTTCGGCTCCATGGGTCAGACCCCGATGGGCCGGGTTCCAAGGGTGTTGTTATGTCTGACTGCGTCAGGCTCTACAAAGATGCTGAGCCACGGCTAGCCTGGTTGGTCTCTGGCAAGGGCTACAATGTGGACGATGCGGTCACGTGGCTGAGCGCGGCGGCCACGAGCCACCGGAGTTGTGTTGACGGGCTGGAGGAGAAAGGGTTGGTGTTTGAAGCTAAGGAGGCTAAGAATTTGAGTTTGGTTATAAAAGAAGCTTTGGCTTTTTATGGACATAACAGGAATATTACAAGGGGAAGAGGCAAAGGAGATATGAAGATGAGACCAAATTTGAACCAAAACGGGGGGCTTTTGGCAACGTGGAATGCGGCAAGTGCCAAGGCAGACCTTGTTGTGGCTCAAGATGGCTCTGGCAACTACAAGACTATCAGTGAGGCTGTTCACGCAGTTTCTAGAATGGGCCGAAACCGACCACATCGCGTAATAATCTATGTGAAATCGGGTGTATACAATGAGAGGGTCGAGATCAAAAGGAACATGAACAACTTGATGTTTGTAGGAGATGGAATCGATACGACAATCGTTACCAGTAACCGAAATGTCCTTGATGGTGCCACTACTTCTAACTCAGCCACATTTGGCGTGTCTGGTGATAGATTTTGGGCGAGAGATATGACGTTTGAGAACACAGCAGGACCCCATAAGCACCAAGCAGTGGCACTAAGTGTGGCCTCGGACTTATCCGTTTTCTACCGTTGTAGCTTCAAAGGATACCAAGACACTCTCTTAGTACATTCTTTAAGACAATTTTATCGCGATTGCCACATTTATGGGACAATCGACTTCATCTTTGGTAATGCTGCAGCTGTCTTTCAAAATTGCGACATTTTCATACGAAAGCCACTCGATCACCAATCCAACATGATAACCGCACAAGGGAGGGACGATTTGAATGAGAACACCGGAATTTCTATAATAAATTCACGTGTGGCAGCCGCACCGGACTTTAGTATGGTTAAAGATCGGTTCAAGAGTTACTTGGGACGGCCTTGGAAAAGGTACTCGAGGACTGTGGTCTTAAAGACGGAACTCGATGGATTGATTGACCCGAAGGGGTGGACCGAATGGAGTGGGAATTTTGCATTGTCGACTCTATATTACGGGGAGTATATGAATTTTGGTAATGGAGCTTCCACTGCGAATAGAGTGAAATGGCCTGGTTTTCATGTGCTAAATGATCCAAGGGAGGCTCGGCCATTTACAGCAAGCAATTTCATCCAAGGGGAGTCATGGATTCCAGTGACCGGAGTGCCATTTTATCTAGAAATCTAA

Network for GWHGAAZE031297

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	56	122	5.40E-09
PF01095.20	Pectinesterase	178	478	6.00E-139

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity
GO:0004857	molecular_function	enzyme inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.004
	SRR3591706	second leaf	0.009
	SRR3591707	mature leaf	0.007
	SRR3591708	Shoot apex	0.013
	SRR3591709	Stem	0.004
	SRR3591710	White floral bud	2.266
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	60.203
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.135
	SRR8316896	Juvenile bud stage	16.535
	SRR8316897	Juvenile bud stage	13.400
	SRR8316894	Third green stage	9.198
	SRR8316900	Third green stage	30.181
	SRR8316901	Third green stage	15.918
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.101
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.123
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.002
SRP132670	SRR6706286	Control	38.665
	SRR6706287	Light intensity 50%	39.574
	SRR6706288	Light intensity 20%	39.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.716
	CNS0095593	Slightly white alabastrum(diploid) 2	16.444
	CNS0095594	Slightly white alabastrum(diploid) 3	53.866
	CNS0095595	Whole white alabastrum(diploid) 2	36.686
	CNS0095596	Whole white alabastrum(diploid) 3	57.194
	CNS0095597	Whole white alabastrum(diploid) 4	78.101
	CNS0095598	Silvery flower (diploied) 1	0.220
	CNS0095599	Silvery flower (diploied) 2	0.337
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.176
	CNS0095602	Golden flower (diploid) 2	0.002
	CNS0095603	Golden flower (diploid) 3	0.117
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.549
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.855
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.178
	CNS0095607	Whole white alabastrum(tetraploid) 1	195.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	189.424
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.248
	CNS0095610	Silvery flower (tetraploid) 1	0.034
	CNS0095611	Silvery flower (tetraploid) 2	0.024
	CNS0095612	Silvery flower (tetraploid) 3	1.794
	CNS0095613	Golden flower (tetraploid) 1	0.200
	CNS0095614	Golden flower (tetraploid) 2	0.014
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	6.090
	CRR073298	Stem 2	7.085
	CRR073299	Stem 3	6.086
	CRR073300	Leaf 1	4.169
	CRR073301	Leaf 2	3.106
	CRR073302	Leaf 3	2.958
	CRR073303	Juvenile bud 1	0.227
	CRR073304	Juvenile bud 2	0.463
	CRR073305	Juvenile bud 3	0.003
	CRR073306	Third green 1	0.003
	CRR073307	Third green 2	0.026
	CRR073308	Third green 3	0.055
	CRR073309	Second white 1	0.003
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.002
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.006
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000