Gene detail

Detail information of GWHGAAZE031280

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002320706.2	2.11287E-55	zinc finger family protein [Populus trichocarpa]
Swissprot	tr\|Q9M202\|ZAT9_ARATH	3E-49	Zinc finger protein ZAT9
trEMBL	tr\|B9IBW4\|B9IBW4_POPTR	8E-56	Zinc finger family protein {ECO:0000313\|EMBL:EEE99021.2}
TAIR10	AT3G60580.1	1E-28	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56477359	56478135	+
GWHAAZE00000009	mRNA	56477359	56478135	+
GWHAAZE00000009	exon	56477359	56477464	+
GWHAAZE00000009	exon	56477597	56478135	+
GWHAAZE00000009	CDS	56477359	56477464	+
GWHAAZE00000009	CDS	56477597	56478135	+

Transcript Sequence
>GWHTAAZE031314 ATGGAGAAATACAAGTGCAAGCTCTGCTTCAAAAGCTTCATTAATGGCAGGGAATTAGGTGGTCACATTAGATCTCACAAAATTGAAGAACCCAATGACTCACTGAATCCCAAGTTTTATCCTCCTTCCATGGGTCTTCATGACCGAGAAAGCGAGACTGAATCTTCGAAAAACCCAACTCGAAGACGGTCTAAGCGGGTTCGAAATTGGGATATCAAAATTCCACACGTTCACAGCTCCAAAGAAGCTTCTAAATCAGAATCTGAACCGGTCAGTTCGATCTCGGACACAACCCCAGATGAAGATGTTGCTTATTGCTTGATGATGCTATCGAGAGACAAATGGAAGAAGAAAAAAGAGAAAGATGAGACGGGTTCAAATCAAAATTTTGATTTCAATTATAAGTTGAAGAAACAGAGCAAGTATAAGTGCGAAACTTGTGAGAGAGTGTTTAAATCTTATCAAGCGCTTGGCGGGCACAGGGCGAGTCACAAGAAGATTAAGACAAAGCAGGTTACCGAGAAGGTTACTTGTTCGATAAAGGTGGAAACAGAGAAAATTCACGAGTGTCCGGTTTGTTTAAGAGTTTTGCGTCTGGTCAGGCACTTGGCGGGCATAAAAGATCACATGATGCGGGTTCATTGA

Network for GWHGAAZE031280

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	4	27	0.0022
PF13912.7	zf-C2H2_6	142	166	9.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.451
	SRR3591706	second leaf	1.763
	SRR3591707	mature leaf	1.263
	SRR3591708	Shoot apex	2.041
	SRR3591709	Stem	5.000
	SRR3591710	White floral bud	4.386
	SRR3591711	White flower	1.441
	SRR3591712	Green floral bud	12.628
	SRR3591713	Yellow flower	0.121
SRP173429	SRR8316895	Juvenile bud stage	1.371
	SRR8316896	Juvenile bud stage	7.060
	SRR8316897	Juvenile bud stage	2.823
	SRR8316894	Third green stage	4.657
	SRR8316900	Third green stage	11.244
	SRR8316901	Third green stage	12.017
	SRR8316898	Complete white stage	0.520
	SRR8316899	Complete white stage	9.898
	SRR8316903	Complete white stage	2.428
	SRR8316902	Silver flowering stage	0.313
	SRR8316904	Silver flowering stage	0.683
	SRR8316905	Silver flowering stage	0.279
	SRR8316906	Gold flowering stage	0.666
	SRR8316907	Gold flowering stage	0.077
	SRR8316908	Gold flowering stage	1.720
SRP132670	SRR6706286	Control	7.789
	SRR6706287	Light intensity 50%	8.256
	SRR6706288	Light intensity 20%	8.043
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.200
	CNS0095593	Slightly white alabastrum(diploid) 2	11.882
	CNS0095594	Slightly white alabastrum(diploid) 3	12.382
	CNS0095595	Whole white alabastrum(diploid) 2	7.033
	CNS0095596	Whole white alabastrum(diploid) 3	8.589
	CNS0095597	Whole white alabastrum(diploid) 4	7.490
	CNS0095598	Silvery flower (diploied) 1	2.199
	CNS0095599	Silvery flower (diploied) 2	1.831
	CNS0095600	Silvery flower (diploied) 3	1.507
	CNS0095601	Golden flower (diploid) 1	2.144
	CNS0095602	Golden flower (diploid) 2	1.992
	CNS0095603	Golden flower (diploid) 3	2.019
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.787
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.511
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.820
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.398
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.685
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.465
	CNS0095610	Silvery flower (tetraploid) 1	1.444
	CNS0095611	Silvery flower (tetraploid) 2	1.259
	CNS0095612	Silvery flower (tetraploid) 3	0.875
	CNS0095613	Golden flower (tetraploid) 1	0.156
	CNS0095614	Golden flower (tetraploid) 2	0.514
	CNS0095615	Golden flower (tetraploid) 3	0.431
CRA001975	CRR073297	Stem 1	8.597
	CRR073298	Stem 2	7.846
	CRR073299	Stem 3	12.262
	CRR073300	Leaf 1	10.522
	CRR073301	Leaf 2	11.583
	CRR073302	Leaf 3	9.862
	CRR073303	Juvenile bud 1	6.031
	CRR073304	Juvenile bud 2	2.973
	CRR073305	Juvenile bud 3	7.942
	CRR073306	Third green 1	2.394
	CRR073307	Third green 2	2.034
	CRR073308	Third green 3	1.739
	CRR073309	Second white 1	1.103
	CRR073310	Second white 2	0.576
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.073
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.185
	CRR073316	Gold flowering 2	2.007
	CRR073317	Gold flowering 3	0.314
	CRR073318	Tawny withering 1	3.265
	CRR073319	Tawny withering 2	1.952
	CRR073320	Tawny withering 3	1.225