Gene detail

Detail information of GWHGAAZE031240

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09429.1	4.17132E-92	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UMF0\|A0A068UMF0_COFCA	2E-92	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09429.1}
TAIR10	AT3G60300.1	1E-56	RWD domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55612550	55615501	+
GWHAAZE00000009	mRNA	55612550	55615501	+
GWHAAZE00000009	exon	55612550	55612689	+
GWHAAZE00000009	exon	55612800	55612906	+
GWHAAZE00000009	exon	55613955	55614067	+
GWHAAZE00000009	exon	55615078	55615501	+
GWHAAZE00000009	CDS	55612550	55612689	+
GWHAAZE00000009	CDS	55612800	55612906	+
GWHAAZE00000009	CDS	55613955	55614067	+
GWHAAZE00000009	CDS	55615078	55615485	+
GWHAAZE00000009	three_prime_UTR	55615486	55615501	+

Transcript Sequence
>GWHTAAZE031274 GAAGCAGTGGAGAGGCTCACTAGTATGAACCACCCAGATGGAGATTGTCCATTGTGTTTGTCTCCTTTGCTTGAAGAAGATGCAGGCGATAACGCATCGCCATTTATGAAGTTGATGTCTTGTTTTCATTGCTTTCACTGCGAATGCATTATCAGGTGGTGGAATTGGCTCCAGATACAAAAAGAAGCAGAGCCTTCTAAATCATCTGGTTCTACTTTATCTTCTCTTGATGTGGAAAATAAACGAGGCATGCATGAAAAGATGGAAGAAAGCATGGGAACGTGCCCAGTTTGCCGTAAGGTTTTTCATGCAAAGGATATTGAGCACGTGCTCGACTTGGTTGGAACTCATTCTCAGTTGAGTTCCAGTGAAGTTGAAGTCAATGAAGATGACGCGCTTCTTCAGTCAGATTCAGAGAAGATTAGAAGAGAGAAATTTGAGGCCATATTAAAGCTACAAGAGGAGAACAGTGGCTTAAATGAAACAAAAAAGAGCGAAGTTTTAATGCCGGGTATGTTTCTTCAACGACCAATCACGCCGTTGACTCAAGCTGAGCCAGATAAAGAAACAGGCGAGAAACTAGAGAGAGAAACGGCAATTGGGTCTGAAACTAAGTCGGGCAGCTCGTCTAATAGGCCTGCTGCGTCTAATAGGCCGAGTGCGAACGAGCACAAGAAGAACTCAGGTATGAGGAAGCAAAAGGGAAGAATGAATTCAAGAAAACAAGTTCAACAGTGGATTAGGAAAGATAGCGGTTCAACAAATTGAAGTGTTGATTCATGGG

Network for GWHGAAZE031240

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.817
	SRR3591706	second leaf	9.413
	SRR3591707	mature leaf	9.039
	SRR3591708	Shoot apex	15.692
	SRR3591709	Stem	10.264
	SRR3591710	White floral bud	11.584
	SRR3591711	White flower	16.669
	SRR3591712	Green floral bud	14.736
	SRR3591713	Yellow flower	12.500
SRP173429	SRR8316895	Juvenile bud stage	10.399
	SRR8316896	Juvenile bud stage	15.279
	SRR8316897	Juvenile bud stage	9.035
	SRR8316894	Third green stage	4.143
	SRR8316900	Third green stage	14.325
	SRR8316901	Third green stage	11.699
	SRR8316898	Complete white stage	4.866
	SRR8316899	Complete white stage	13.224
	SRR8316903	Complete white stage	5.992
	SRR8316902	Silver flowering stage	5.136
	SRR8316904	Silver flowering stage	6.256
	SRR8316905	Silver flowering stage	3.393
	SRR8316906	Gold flowering stage	7.202
	SRR8316907	Gold flowering stage	8.589
	SRR8316908	Gold flowering stage	6.533
SRP132670	SRR6706286	Control	15.743
	SRR6706287	Light intensity 50%	14.091
	SRR6706288	Light intensity 20%	15.149
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.458
	CNS0095593	Slightly white alabastrum(diploid) 2	14.061
	CNS0095594	Slightly white alabastrum(diploid) 3	19.374
	CNS0095595	Whole white alabastrum(diploid) 2	10.730
	CNS0095596	Whole white alabastrum(diploid) 3	10.596
	CNS0095597	Whole white alabastrum(diploid) 4	8.382
	CNS0095598	Silvery flower (diploied) 1	9.005
	CNS0095599	Silvery flower (diploied) 2	9.721
	CNS0095600	Silvery flower (diploied) 3	9.042
	CNS0095601	Golden flower (diploid) 1	8.599
	CNS0095602	Golden flower (diploid) 2	8.252
	CNS0095603	Golden flower (diploid) 3	6.826
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.058
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.708
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.846
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.796
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.815
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.329
	CNS0095610	Silvery flower (tetraploid) 1	9.216
	CNS0095611	Silvery flower (tetraploid) 2	9.046
	CNS0095612	Silvery flower (tetraploid) 3	9.858
	CNS0095613	Golden flower (tetraploid) 1	4.352
	CNS0095614	Golden flower (tetraploid) 2	5.199
	CNS0095615	Golden flower (tetraploid) 3	6.015
CRA001975	CRR073297	Stem 1	10.550
	CRR073298	Stem 2	12.652
	CRR073299	Stem 3	7.740
	CRR073300	Leaf 1	11.189
	CRR073301	Leaf 2	9.042
	CRR073302	Leaf 3	8.580
	CRR073303	Juvenile bud 1	10.528
	CRR073304	Juvenile bud 2	4.956
	CRR073305	Juvenile bud 3	6.180
	CRR073306	Third green 1	3.320
	CRR073307	Third green 2	4.866
	CRR073308	Third green 3	3.936
	CRR073309	Second white 1	2.482
	CRR073310	Second white 2	5.335
	CRR073311	Second white 3	3.498
	CRR073312	Silver flowering 1	3.193
	CRR073313	Silver flowering 2	3.845
	CRR073314	Silver flowering 3	4.330
	CRR073315	Gold flowering 1	5.952
	CRR073316	Gold flowering 2	8.816
	CRR073317	Gold flowering 3	3.788
	CRR073318	Tawny withering 1	15.180
	CRR073319	Tawny withering 2	12.060
	CRR073320	Tawny withering 3	13.176