Gene detail

Detail information of GWHGAAZE031217

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251848.1	0	PREDICTED: cell division control protein 48 homolog C [Nelumbo nucifera]
COG	YP_001736637.1	3E-153	AAA ATPase
Swissprot	tr\|Q9SS94\|CD48C_ARATH	0	Cell division control protein 48 homolog C
trEMBL	tr\|A0A061EJT7\|A0A061EJT7_THECC	0	Cell division control protein 48 C isoform 1 {ECO:0000313\|EMBL:EOY04928.1}
TAIR10	AT3G01610.1	0	cell division cycle 48C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55196480	55204879	-
GWHAAZE00000009	mRNA	55196480	55204879	-
GWHAAZE00000009	exon	55196480	55196634	-
GWHAAZE00000009	exon	55197138	55197294	-
GWHAAZE00000009	exon	55197424	55197625	-
GWHAAZE00000009	exon	55198291	55198355	-
GWHAAZE00000009	exon	55198462	55198527	-
GWHAAZE00000009	exon	55199354	55199458	-
GWHAAZE00000009	exon	55199574	55199690	-
GWHAAZE00000009	exon	55201975	55202127	-
GWHAAZE00000009	exon	55202459	55203075	-
GWHAAZE00000009	exon	55203874	55204879	-
GWHAAZE00000009	CDS	55203874	55204879	-
GWHAAZE00000009	CDS	55202459	55203075	-
GWHAAZE00000009	CDS	55201975	55202127	-
GWHAAZE00000009	CDS	55199574	55199690	-
GWHAAZE00000009	CDS	55199354	55199458	-
GWHAAZE00000009	CDS	55198462	55198527	-
GWHAAZE00000009	CDS	55198291	55198355	-
GWHAAZE00000009	CDS	55197424	55197625	-
GWHAAZE00000009	CDS	55197138	55197294	-
GWHAAZE00000009	CDS	55196480	55196634	-

Transcript Sequence
>GWHTAAZE031251 ATGAAGAGTTTTGGAAGGAGACAATCAAATGGAGGGGGTAGACCAGAGTCATTATCCGAAAAGGTCCTTCGTCGTCAAATAGAAGAGTCCCACAATTACAATAACCTCAGCATTGACCAACTAGTTGATCACCTCCGTGCAACCATCCCTTCATACAGACGCCACAAGCTCCAACCGTTCACACGGCAGGTTCAGAAAGCCTTGCAACGCATTGACAACACTCAATTCGTAAAGCACAACAAGTCAAGTGATCGCGACCGTCCATCCACATTCAACTTCGATGAGACCGAAGATGAAAACAAGGCCACACCACTCCAAAGTCCTGTCCGTAAGAGGGTGAAAAGAACCGATAGATGTGAAGAGAGATTGCAGTTTATGGAGACCCAACATATTCTTAGGAAACAAAAAGGTGGACAAGATCAGGACCGTCCATCAACATCATCCTCTTCTTCATCTTCATCGTCAACTTCGTCTGACGAGGAAGAAGACGGTGCGGTTTCGATGTCTGAGGATGCTGTTTATGGAGAGAAAATGGAGCCAGAGTTCGATTTAATGAAGTCCATGCTCCGAACGAGTTACGGTGGATCCAAGAACACTCCACAATCAAAGCGTTCACAGGAGAAGAATGTTGAACTCGAGGTTGTTAATAATAGGGCCTCGAAGAAAGTTGATTTCGTAGACGGGGATAGAAGGGAGACCAGTGGATTAAACTCGGGAAGAGCAAAGAGTTCAAATGACGGTGGTAGAGATGAGAAGATTAACAATGGACCGAAGTTTAAGGATCTTGGTGGAATGAATGCAGTGGTGGATGAACTAAAGATGGAGGTTATTGTTCCGCTCTACCATCCACAACTACCTCGGTGGCTTGGAGTGCGACCAATGGCTGGGATTTTGTTACACGGTCCCCCAGGTTGTGGAAAGACTAAGCTAGCCCATGCCATTGCTAATGAGACCAGAGTCCCTTTTTATAAAATTTCGGCCACTGAATTGGTCTCTGGTGTATCAGGTGCATCGGAAGAGAATATTCGGGAGCTGTTTTCAAAAGCATACAGGACCGCACCATCTATTGTGTTCATTGATGAAATCGATGCAATTGCATCAAAAAGAGAGAACCTGCAGAGGGAAATGGAACGGCGAATTGTGACCCAATTGATGACTTGCATGGACGAATCACATAGAATTGTAAAACCATCTGACGAATATGCCAGCTCTGAAAGTTCTGATGTCAAACCTGGCTATGTCCTCATAATCGGAGCTACCAATAGGCCCGATGCTGTTGACTCTGCATTAAGGAGGCCTGGGCGATTTGATCGTGAGATTGTTTTAGGTGTTCCTGATGAAAACGCAAGGGTTGAAATTCTTAAAGTGCTTACTCGAAATCTTAAGCTTGAAGGTGCTTTTGATCTTGTGAAAATTGCTAGATCCACTCCAGGGTTTGTTGGAGCGGATTTGGCTGCTCTGGCTAACAAGGCTGGTAACCTTGCTATGAAGAGAATCATAGATCAAAGAAAATTTGAGTTTTCTAAGGAACCCATGGATGGAGAAGATACCGAGGATTGGTGGAGGAAACCATGGTCACCTGAAGAGATGGAAAAGCTTAGCATCACAATGGTTGATTTTGAGGAAGCAGCTAAAATGGTTCAACCTTCTTCTAGAAGAGAGGGGTTCTCAGCTATTCCCAACGTAAAATGGGAAGATGTTGGAGGGCTTGATGTGTTGAGGCAGGAGTTTGATCGTTATATAGTTAGGCGCATAAAATATCCAGAGGATTATGAGGAATTTGGAGTGGATTTGGAGACAGGATTTCTGCTTTACGGACCCCCAGGCTGTGGTAAAACATTAATTGCCAAAGCTGTTGCTAATGAAGCTGGAGCGAATTTCATACACATTAAGGGTCCCGAACTTCTGAATAAGTATGTGGGTGAAAGTGAGTTGGCAGTGCGGACAATATTCAGTCGTGCAAGGACATGTGCTCCATGCATACTTTTCTTTGATGAGGTGGATGCTTTGACGACGAAGCGCGGAAAGGAAGGGGGATGGGTTGTTGAGCGACTTCTAAATCAGCTTCTGATTGAACTAGACGGTGCTGATCAGCGTCGGGGTGTTTATGTGATTGGTGCTACCAATAGGCCGGAGGTGATGGACCGTGCAGTCTTACGGCCCGGACGGTTTGGAAAACTTTTGTATGTGCCGTTGCCGAGTCCAGAAGAACGTGGGTTGATCCTAAAAGCTCTTTCTAGAAAGAAACCAATAGAAGCCAATGTAGACTTGCTTGCGATTGGAAAGAACGAGTCCTGCAAAAACCTAAGTGGAGCCGACCTTTCCGCCCTGATGAACGAAGCTGCCATGGCTGCTCTTGATGAGAAACTGAGATTAGCGCAGAGCAGTTCAGATGGTTCACCATTGACTATCAAAGACATACATTTTAAGCGTGCATTGGAGAAAATTTCTCCTTCTGTCTCAGACAAGGTGCTTGCTAATTTCTTTGCAAAAACAGTATTACCACCTTTTGTCAGAGAGCTTCAAAGCAGTATGAGTGTGGAGAAGATATTGGGTACTCCACAAGTACCACATGGCTCTTCGCTTGCTCCATTTATTGCTTCCCATGTAGGATGTTCGGGTCCTGCATGTTCTCCGTTATAG

Network for GWHGAAZE031217

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16725.6	Nucleolin_bd	18	73	1.40E-06
PF00004.30	AAA	297	442	8.40E-39
PF17862.2	AAA_lid_3	467	502	6.50E-09
PF00004.30	AAA	603	731	5.30E-42
PF17862.2	AAA_lid_3	754	791	3.50E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14571	RIX7, NVL	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.960
	SRR3591706	second leaf	11.328
	SRR3591707	mature leaf	9.888
	SRR3591708	Shoot apex	15.786
	SRR3591709	Stem	12.862
	SRR3591710	White floral bud	12.103
	SRR3591711	White flower	15.871
	SRR3591712	Green floral bud	12.936
	SRR3591713	Yellow flower	12.601
SRP173429	SRR8316895	Juvenile bud stage	11.452
	SRR8316896	Juvenile bud stage	15.567
	SRR8316897	Juvenile bud stage	7.817
	SRR8316894	Third green stage	6.444
	SRR8316900	Third green stage	13.388
	SRR8316901	Third green stage	12.760
	SRR8316898	Complete white stage	3.735
	SRR8316899	Complete white stage	13.939
	SRR8316903	Complete white stage	7.855
	SRR8316902	Silver flowering stage	3.533
	SRR8316904	Silver flowering stage	6.420
	SRR8316905	Silver flowering stage	3.219
	SRR8316906	Gold flowering stage	8.932
	SRR8316907	Gold flowering stage	10.846
	SRR8316908	Gold flowering stage	12.947
SRP132670	SRR6706286	Control	14.795
	SRR6706287	Light intensity 50%	14.933
	SRR6706288	Light intensity 20%	14.817
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.190
	CNS0095593	Slightly white alabastrum(diploid) 2	8.251
	CNS0095594	Slightly white alabastrum(diploid) 3	7.650
	CNS0095595	Whole white alabastrum(diploid) 2	7.398
	CNS0095596	Whole white alabastrum(diploid) 3	5.521
	CNS0095597	Whole white alabastrum(diploid) 4	6.408
	CNS0095598	Silvery flower (diploied) 1	9.789
	CNS0095599	Silvery flower (diploied) 2	8.204
	CNS0095600	Silvery flower (diploied) 3	10.945
	CNS0095601	Golden flower (diploid) 1	7.886
	CNS0095602	Golden flower (diploid) 2	11.286
	CNS0095603	Golden flower (diploid) 3	10.966
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.072
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.296
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.052
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.425
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.546
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.891
	CNS0095610	Silvery flower (tetraploid) 1	12.075
	CNS0095611	Silvery flower (tetraploid) 2	11.882
	CNS0095612	Silvery flower (tetraploid) 3	8.997
	CNS0095613	Golden flower (tetraploid) 1	6.871
	CNS0095614	Golden flower (tetraploid) 2	11.250
	CNS0095615	Golden flower (tetraploid) 3	8.951
CRA001975	CRR073297	Stem 1	19.021
	CRR073298	Stem 2	15.025
	CRR073299	Stem 3	13.100
	CRR073300	Leaf 1	16.225
	CRR073301	Leaf 2	15.458
	CRR073302	Leaf 3	11.034
	CRR073303	Juvenile bud 1	8.237
	CRR073304	Juvenile bud 2	4.827
	CRR073305	Juvenile bud 3	12.576
	CRR073306	Third green 1	2.147
	CRR073307	Third green 2	2.659
	CRR073308	Third green 3	3.774
	CRR073309	Second white 1	4.611
	CRR073310	Second white 2	3.618
	CRR073311	Second white 3	5.230
	CRR073312	Silver flowering 1	4.955
	CRR073313	Silver flowering 2	6.106
	CRR073314	Silver flowering 3	5.903
	CRR073315	Gold flowering 1	3.797
	CRR073316	Gold flowering 2	9.376
	CRR073317	Gold flowering 3	5.681
	CRR073318	Tawny withering 1	9.654
	CRR073319	Tawny withering 2	8.212
	CRR073320	Tawny withering 3	12.044