Gene detail

Detail information of GWHGAAZE031210

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010274564.1	0	PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Nelumbo nucifera]
Swissprot	tr\|O80505\|ALG8_ARATH	0	Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase
trEMBL	tr\|M0ZN96\|M0ZN96_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400004336}
TAIR10	AT2G44660.1	6E-170	ALG6, ALG8 glycosyltransferase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55053241	55056733	-
GWHAAZE00000009	mRNA	55053241	55056733	-
GWHAAZE00000009	exon	55053241	55053674	-
GWHAAZE00000009	exon	55054491	55054728	-
GWHAAZE00000009	exon	55055087	55055293	-
GWHAAZE00000009	exon	55055788	55056733	-
GWHAAZE00000009	five_prime_UTR	55056547	55056733	-
GWHAAZE00000009	CDS	55055788	55056546	-
GWHAAZE00000009	CDS	55055087	55055293	-
GWHAAZE00000009	CDS	55054491	55054728	-
GWHAAZE00000009	CDS	55053241	55053674	-

Transcript Sequence
>GWHTAAZE031244 AAATTCCCCGCATGGTCGAATATAAACCCGGGACTGAAGCAGAACACGGTAGTCTTGTGGCAGTCATCGCCGGCCGGCCGGCCATCAATTGCATTCAGGCGAACCGTGTAACACTACTTCACCTCTAGCCCCCTCACTTAAACGATTTCACCTTCAGTCCCCGGCCATCACCCACTTGCAAAAAGCCATGAAAGACCCAAAAAAGAACCAAACCCAGATCCCAAATCCTCCCAATCCACCCATCAAACACCTTCTGTGGTTTGCCCTAATCGCCACTTTCTTCAAACTCCTCCTCATCCCCGCTTACCACAGCACTGATTTCGAGGTCCACCGCCACTGGCTTGCCCTAACCCACTCCCTCCCTCTCTCTCAATGGTACTCCGACGAGACCAGTCCATGGACCCTCGATTACCCTCCTTTCTTCGCCCACTTAGAGTATTTCCTCTCTCTCTTCGCCCAATTCGTCGACCCAATTATCGTTGATCTCAACAAAGGTTTGAATTGCAGTTCACCTTCACTCGTTATCTTTCAAAGAATCACAGTAATGGTTTCGGACTCTATACTGATCTATGGGGTTTATAAATTGAGTCGGAATTTGGGGTTGAGGAAGGGGGTTTTGATTTGGGTTTTGGTTGTTTGGTCCCCTGGGCTATTGATTGTTGATCATATGCATTTTCAGTATAATGGGTTTCTTTTGGGGGTTTTGTTGGTTTCTTTGGGGTGTTTGGAGGAAGGGAAGGATTTGATGGGTGGGTTTGTTTTTGCTGTCTTGTTGTGTTTCAAGCACTTGTTTGCTGTTGCGGCGCCGGTATATTTTGTTTATTTGTTTAGGCATTACTGTTATCGTGGCGGATTTCTAAAGGGAGTTGGGCGGTTGGTGGCGATGGGAGTGGTGGTTGTGGCAGTTTTCGCGACGGCATATGGACCTTTTGTGTATTATGGACAGATACAACAAGTTTTTCGCCGCATGTTTCCTTTTGGTAGGGGACTCTGCCATGCTTATTGGGCTCCGAATTTTTGGGTTTTCTATATAATTCTTGATAAATTGTTTGCTTTCTTGCTTGCAAAGCTGGGATTCAGCATCCATGCACCTACAGCTTCATTCACCGGTGGGCTAGTGGGAGATTCCTCTCCCTTTGCTGTACTACCTACGATCACGCCTTTGATCACTTTTATTATGGTCCTGCTCGCCATATCTCCTTGTCTTATCAAGGCATGGAGGTATCCCCAGCCAAGGATGATCACTAGATGGGTAGCCTATGCTTACACATGCGGCTTCATGTTTGGGTGGCATGTTCATGAGAAGGCGTCTCTTCACTTTGTTGTACCCTTTGCTTTTGTTGCGGTACAAAGCATGGAGGATGCAACGCATTACTTCTTGATGGCGATAGTACACATCTCTTCTGTTATATACGCAGTGTCCTGCTACTCTCTCTTCCCTCTTCTATTCGAAGCACAAGAGTATCCGATAAAAGTGCTATTACTTCTTCTACACACCATTTTCATGTGGTTTGGGTTTTCCTCGCTATCCTCAAAGATTGCGACTGCAAAAGCAAATACGCGTGGGCCTCTGAAATCCAATAAACAGGAACCAAAACTGAGTTCCAATGCCGTCTCTAACAATGGAGAGTTTTATATAGGATGGATCCTGAAAATTTATCTTGTGGGTCTTTTGGTTGTTGAGACTTGGGGACAGATTCTACACCCTTATCTACTAGGTAATAAGCTTCCCTTCTTACCTCTTATGATGATCTCTATATATTGTGCTTTAGGGATGATGTACTCTTGGTTTTGGCAACTTAGATTTATCATTAGGAATGGTTGA

Network for GWHGAAZE031210

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03155.16	Alg6_Alg8	29	536	6.30E-153

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03849	ALG8	Metabolic pathways	map01100
K03849	ALG8	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0005789	cellular_component	endoplasmic reticulum membrane
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.667
	SRR3591706	second leaf	7.126
	SRR3591707	mature leaf	6.502
	SRR3591708	Shoot apex	12.037
	SRR3591709	Stem	12.322
	SRR3591710	White floral bud	10.899
	SRR3591711	White flower	11.529
	SRR3591712	Green floral bud	13.216
	SRR3591713	Yellow flower	7.885
SRP173429	SRR8316895	Juvenile bud stage	8.023
	SRR8316896	Juvenile bud stage	12.584
	SRR8316897	Juvenile bud stage	6.156
	SRR8316894	Third green stage	5.042
	SRR8316900	Third green stage	15.103
	SRR8316901	Third green stage	13.194
	SRR8316898	Complete white stage	4.319
	SRR8316899	Complete white stage	18.022
	SRR8316903	Complete white stage	8.211
	SRR8316902	Silver flowering stage	4.851
	SRR8316904	Silver flowering stage	6.821
	SRR8316905	Silver flowering stage	3.434
	SRR8316906	Gold flowering stage	10.102
	SRR8316907	Gold flowering stage	8.684
	SRR8316908	Gold flowering stage	8.822
SRP132670	SRR6706286	Control	13.284
	SRR6706287	Light intensity 50%	13.287
	SRR6706288	Light intensity 20%	14.117
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.993
	CNS0095593	Slightly white alabastrum(diploid) 2	11.300
	CNS0095594	Slightly white alabastrum(diploid) 3	9.925
	CNS0095595	Whole white alabastrum(diploid) 2	9.461
	CNS0095596	Whole white alabastrum(diploid) 3	9.822
	CNS0095597	Whole white alabastrum(diploid) 4	7.819
	CNS0095598	Silvery flower (diploied) 1	12.166
	CNS0095599	Silvery flower (diploied) 2	10.886
	CNS0095600	Silvery flower (diploied) 3	13.951
	CNS0095601	Golden flower (diploid) 1	10.564
	CNS0095602	Golden flower (diploid) 2	14.795
	CNS0095603	Golden flower (diploid) 3	14.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.869
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.257
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.656
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.548
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.388
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.373
	CNS0095610	Silvery flower (tetraploid) 1	12.089
	CNS0095611	Silvery flower (tetraploid) 2	11.501
	CNS0095612	Silvery flower (tetraploid) 3	8.740
	CNS0095613	Golden flower (tetraploid) 1	5.599
	CNS0095614	Golden flower (tetraploid) 2	12.846
	CNS0095615	Golden flower (tetraploid) 3	8.096
CRA001975	CRR073297	Stem 1	11.762
	CRR073298	Stem 2	11.420
	CRR073299	Stem 3	10.040
	CRR073300	Leaf 1	13.184
	CRR073301	Leaf 2	12.586
	CRR073302	Leaf 3	11.474
	CRR073303	Juvenile bud 1	8.629
	CRR073304	Juvenile bud 2	7.860
	CRR073305	Juvenile bud 3	14.262
	CRR073306	Third green 1	2.973
	CRR073307	Third green 2	2.908
	CRR073308	Third green 3	2.798
	CRR073309	Second white 1	5.236
	CRR073310	Second white 2	2.967
	CRR073311	Second white 3	3.621
	CRR073312	Silver flowering 1	3.277
	CRR073313	Silver flowering 2	3.707
	CRR073314	Silver flowering 3	3.655
	CRR073315	Gold flowering 1	3.645
	CRR073316	Gold flowering 2	3.609
	CRR073317	Gold flowering 3	3.438
	CRR073318	Tawny withering 1	8.787
	CRR073319	Tawny withering 2	6.799
	CRR073320	Tawny withering 3	8.519