Detail information of GWHGAAZE031208


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009603589.11.0774E-119PREDICTED: E3 ubiquitin-protein ligase ATL4 [Nicotiana tomentosiformis]
Swissprottr|Q9LY41|ATL4_ARATH4E-76E3 ubiquitin-protein ligase ATL4
trEMBLtr|A0A068ULH1|A0A068ULH1_COFCA4E-110Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09385.1}
TAIR10AT3G60220.11E-47TOXICOS EN LEVADURA 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5503150255034598-
GWHAAZE00000009mRNA5503150255034598-
GWHAAZE00000009exon5503457155034598-
GWHAAZE00000009exon5503150255032367-
GWHAAZE00000009CDS5503457155034598-
GWHAAZE00000009CDS5503150255032367-
Transcript Sequence

Network for GWHGAAZE031208

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2841275.30E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.303
SRR3591706second leaf4.256
SRR3591707mature leaf0.805
SRR3591708Shoot apex10.086
SRR3591709Stem0.842
SRR3591710White floral bud0.957
SRR3591711White flower0.343
SRR3591712Green floral bud2.734
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.122
SRR8316896Juvenile bud stage 1.693
SRR8316897Juvenile bud stage 0.119
SRR8316894Third green stage 1.283
SRR8316900Third green stage 2.865
SRR8316901Third green stage 3.989
SRR8316898Complete white stage 0.038
SRR8316899Complete white stage 1.505
SRR8316903Complete white stage 0.289
SRR8316902Silver flowering stage0.043
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.104
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control3.110
SRR6706287Light intensity 50%2.820
SRR6706288Light intensity 20%3.209
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.137
CNS0095593Slightly white alabastrum(diploid) 22.922
CNS0095594Slightly white alabastrum(diploid) 30.178
CNS0095595Whole white alabastrum(diploid) 20.904
CNS0095596Whole white alabastrum(diploid) 31.922
CNS0095597Whole white alabastrum(diploid) 40.426
CNS0095598Silvery flower (diploied) 10.361
CNS0095599Silvery flower (diploied) 20.025
CNS0095600Silvery flower (diploied) 30.173
CNS0095601Golden flower (diploid) 10.135
CNS0095602Golden flower (diploid) 20.312
CNS0095603Golden flower (diploid) 30.356
CNS0095604Slightly white alabastrum(tetraploid) 15.411
CNS0095605Slightly white alabastrum(tetraploid) 23.395
CNS0095606Slightly white alabastrum(tetraploid) 310.919
CNS0095607Whole white alabastrum(tetraploid) 11.493
CNS0095608Whole white alabastrum(tetraploid) 20.739
CNS0095609Whole white alabastrum(tetraploid) 33.149
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.303
CNS0095612Silvery flower (tetraploid) 30.560
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.058
CRA001975CRR073297Stem 18.697
CRR073298Stem 26.748
CRR073299Stem 37.924
CRR073300Leaf 17.082
CRR073301Leaf 27.849
CRR073302Leaf 312.706
CRR073303Juvenile bud 12.614
CRR073304Juvenile bud 20.604
CRR073305Juvenile bud 33.158
CRR073306Third green 11.800
CRR073307Third green 21.191
CRR073308Third green 30.803
CRR073309Second white 10.061
CRR073310Second white 20.138
CRR073311Second white 30.377
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.174
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.422
CRR073316Gold flowering 20.334
CRR073317Gold flowering 30.193
CRR073318Tawny withering 11.301
CRR073319Tawny withering 20.084
CRR073320Tawny withering 30.798