Detail information of GWHGAAZE031066


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010033246.11.70973E-92PREDICTED: protein SEC13 homolog [Eucalyptus grandis]
COGYP_007119786.14E-11WD40 repeat-containing protein
Swissprottr|O64740|SC13B_ARATH3E-82Protein transport protein SEC13 homolog B {ECO:0000305}
trEMBLtr|A0A059AG71|A0A059AG71_EUCGR6E-93Uncharacterized protein {ECO:0000313|EMBL:KCW52833.1}
TAIR10AT2G30050.14E-67transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5248295852483670-
GWHAAZE00000009mRNA5248295852483670-
GWHAAZE00000009exon5248295852483373-
GWHAAZE00000009exon5248345152483670-
GWHAAZE00000009CDS5248345152483670-
GWHAAZE00000009CDS5248295852483373-
Transcript Sequence

Network for GWHGAAZE031066

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD408370.022
PF00400.33WD401151500.27
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14004SEC13 RNA transport map03013
Protein processing in endoplasmic reticulummap04141
mTOR signaling pathwaymap04150

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.308
SRR3591706second leaf1.012
SRR3591707mature leaf1.647
SRR3591708Shoot apex3.287
SRR3591709Stem3.065
SRR3591710White floral bud0.698
SRR3591711White flower1.732
SRR3591712Green floral bud2.415
SRR3591713Yellow flower0.187
SRP173429 SRR8316895Juvenile bud stage 1.107
SRR8316896Juvenile bud stage 2.249
SRR8316897Juvenile bud stage 1.171
SRR8316894Third green stage 0.472
SRR8316900Third green stage 0.935
SRR8316901Third green stage 1.157
SRR8316898Complete white stage 0.088
SRR8316899Complete white stage 1.846
SRR8316903Complete white stage 0.341
SRR8316902Silver flowering stage0.287
SRR8316904Silver flowering stage0.081
SRR8316905Silver flowering stage0.020
SRR8316906Gold flowering stage 0.722
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.117
SRP132670SRR6706286Control1.085
SRR6706287Light intensity 50%0.890
SRR6706288Light intensity 20%1.224
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.545
CNS0095593Slightly white alabastrum(diploid) 20.356
CNS0095594Slightly white alabastrum(diploid) 31.209
CNS0095595Whole white alabastrum(diploid) 21.256
CNS0095596Whole white alabastrum(diploid) 31.374
CNS0095597Whole white alabastrum(diploid) 40.464
CNS0095598Silvery flower (diploied) 11.766
CNS0095599Silvery flower (diploied) 26.576
CNS0095600Silvery flower (diploied) 30.811
CNS0095601Golden flower (diploid) 11.667
CNS0095602Golden flower (diploid) 21.273
CNS0095603Golden flower (diploid) 31.863
CNS0095604Slightly white alabastrum(tetraploid) 10.285
CNS0095605Slightly white alabastrum(tetraploid) 20.214
CNS0095606Slightly white alabastrum(tetraploid) 30.531
CNS0095607Whole white alabastrum(tetraploid) 10.496
CNS0095608Whole white alabastrum(tetraploid) 20.360
CNS0095609Whole white alabastrum(tetraploid) 30.393
CNS0095610Silvery flower (tetraploid) 10.260
CNS0095611Silvery flower (tetraploid) 20.202
CNS0095612Silvery flower (tetraploid) 30.158
CNS0095613Golden flower (tetraploid) 10.153
CNS0095614Golden flower (tetraploid) 20.421
CNS0095615Golden flower (tetraploid) 30.109
CRA001975CRR073297Stem 10.790
CRR073298Stem 22.007
CRR073299Stem 30.602
CRR073300Leaf 12.322
CRR073301Leaf 22.185
CRR073302Leaf 30.640
CRR073303Juvenile bud 10.286
CRR073304Juvenile bud 21.843
CRR073305Juvenile bud 30.776
CRR073306Third green 10.356
CRR073307Third green 20.182
CRR073308Third green 30.872
CRR073309Second white 10.342
CRR073310Second white 20.377
CRR073311Second white 30.062
CRR073312Silver flowering 10.473
CRR073313Silver flowering 20.124
CRR073314Silver flowering 30.254
CRR073315Gold flowering 11.920
CRR073316Gold flowering 20.765
CRR073317Gold flowering 31.034
CRR073318Tawny withering 11.146
CRR073319Tawny withering 22.984
CRR073320Tawny withering 31.246