Gene detail

Detail information of GWHGAAZE031028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010242234.1	3.2858E-163	PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q8H1F5\|IDD7_ARATH	1E-117	Protein indeterminate-domain 7 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|B9SN27\|B9SN27_RICCO	6E-157	Nucleic acid binding protein, putative {ECO:0000313\|EMBL:EEF34962.1}
TAIR10	AT1G55110.1	1E-94	indeterminate(ID)-domain 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51953316	51955539	-
GWHAAZE00000009	mRNA	51953316	51955539	-
GWHAAZE00000009	exon	51953316	51953407	-
GWHAAZE00000009	exon	51953594	51954366	-
GWHAAZE00000009	exon	51954638	51955037	-
GWHAAZE00000009	exon	51955308	51955539	-
GWHAAZE00000009	CDS	51955308	51955539	-
GWHAAZE00000009	CDS	51954638	51955037	-
GWHAAZE00000009	CDS	51953594	51954366	-
GWHAAZE00000009	CDS	51953316	51953407	-

Transcript Sequence
>GWHTAAZE031062 ATGATGTTGACGAAAGGTCAAGTGACAGTCAAGCAACAACAGCCACTTCTTGTGGAGGAGAACATGTCCGATCTCACCTCTGCTGCTGCTGCTGCATCTGGTGAAGCTAGTAGTACTCTTTCTTCTTGCAATATTGGAGCTGACCAAAATGCCACCATCTATCAACAACACCTTCCTCCTCCAATTCAATCTCAACCACCCAGGAAGAAGAGAAATCTACCTGGCAACCCAGATCCAGATGCAGAAGTAATAGCTTTATCCCCAAAGTCCCTAATGGCAACCAACAGATTTATGTGCGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTACAACTCCACAGGAGAGGGCACAATTTGCCATGGAAGCTAAAGCAGAGAAACAGCAAAGAAGTGATGAGGAAGAAGGTTTATGTGTGCCCAGAGGTAAGCTGTGTGCACCACGACCCATCGAGGGCACTAGGAGACCTCACCGGTATCAAGAAGCACTTTTTCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAATGCTCAAAGCGTTACGCTGTTCAATCCGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAGTACAGATGTGATTGTGGTACTCTTTTCTCTAGGCGGGATAGTTTCATAACTCACAGAGCATTCTGTGATGCTCTAGCGGAAGAGAGCTCGAGATCTAATCCGCTCATGGTGCCCTCTCAAGCACCATCTGATCATATGATTAATCTTCAGACTCAACAATTTTCTAACGGTCAATTCTTGGTGAAAAGAGAAGAACAAAATTTTAGTACGAATCCAAGGACTGAGATTCCTCCGTGGCTAGCTTACTCGGGTCTGCCATCATTTGATCTTAGCTCTTCAATCTATAATCATCAAGATCAATTTGCATCACTAATCCATCATGAGAACCAAAACCTAAACCCTAACCCTAATCCCAACCCTAGGCTTAGTGTTGGGCCCACCCTACCTCCCTACCACCACCAGCCGAACCCACACACCTCTGCAACAGCATTGCTGCAAAAAGCAGCTCAGATGGGTGCAACAATGAGCAGCAAAACTTGTACCTTCAACCACCACCAAGGTCACGTGCCTGCCAATTCTGGCGATAATAGTAATAGTAACAATAATACAAATGGGTTTGGTCTGAATTTGTCCTCACGTGACCAAGAGTTGGCCTCAATAGGGAATAAAGCTGCTGCTTGTGGTGGTAGTACTCTAGCGGACCACAACGTACAAGCTATGACAGCAGCAGCAGCAGCACCACCTTCTTTTCTACAAGAAATGATGATGAGTGGGTTTGATGGGTCAACGTTTGAAGATCATGCATTTGGCTGTTATGATGATTTGTTGGGTTCAAAGAAATTAGAGGAGTACTATCCTAATTTCACAGATGGAGCTGGTGGTACAATTGGTAACTGCATGAACAGCAGTACTAATTCTCAAGATCATATTCAGAATCATAACCATAAACCATGGCAA

Network for GWHGAAZE031028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12171.9	zf-C2H2_jaz	97	119	6.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.359
	SRR3591706	second leaf	28.080
	SRR3591707	mature leaf	35.538
	SRR3591708	Shoot apex	26.012
	SRR3591709	Stem	13.869
	SRR3591710	White floral bud	17.305
	SRR3591711	White flower	22.410
	SRR3591712	Green floral bud	13.322
	SRR3591713	Yellow flower	20.142
SRP173429	SRR8316895	Juvenile bud stage	6.360
	SRR8316896	Juvenile bud stage	8.786
	SRR8316897	Juvenile bud stage	3.561
	SRR8316894	Third green stage	5.175
	SRR8316900	Third green stage	11.699
	SRR8316901	Third green stage	8.322
	SRR8316898	Complete white stage	3.909
	SRR8316899	Complete white stage	15.410
	SRR8316903	Complete white stage	9.375
	SRR8316902	Silver flowering stage	4.700
	SRR8316904	Silver flowering stage	6.116
	SRR8316905	Silver flowering stage	2.332
	SRR8316906	Gold flowering stage	8.704
	SRR8316907	Gold flowering stage	5.490
	SRR8316908	Gold flowering stage	10.400
SRP132670	SRR6706286	Control	18.084
	SRR6706287	Light intensity 50%	17.252
	SRR6706288	Light intensity 20%	16.618
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.184
	CNS0095593	Slightly white alabastrum(diploid) 2	6.249
	CNS0095594	Slightly white alabastrum(diploid) 3	7.295
	CNS0095595	Whole white alabastrum(diploid) 2	10.361
	CNS0095596	Whole white alabastrum(diploid) 3	5.736
	CNS0095597	Whole white alabastrum(diploid) 4	7.899
	CNS0095598	Silvery flower (diploied) 1	24.101
	CNS0095599	Silvery flower (diploied) 2	12.893
	CNS0095600	Silvery flower (diploied) 3	21.066
	CNS0095601	Golden flower (diploid) 1	22.236
	CNS0095602	Golden flower (diploid) 2	29.109
	CNS0095603	Golden flower (diploid) 3	28.172
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.461
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.490
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.755
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.521
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.709
	CNS0095610	Silvery flower (tetraploid) 1	16.710
	CNS0095611	Silvery flower (tetraploid) 2	26.026
	CNS0095612	Silvery flower (tetraploid) 3	4.942
	CNS0095613	Golden flower (tetraploid) 1	6.276
	CNS0095614	Golden flower (tetraploid) 2	11.772
	CNS0095615	Golden flower (tetraploid) 3	30.029
CRA001975	CRR073297	Stem 1	23.807
	CRR073298	Stem 2	22.899
	CRR073299	Stem 3	19.681
	CRR073300	Leaf 1	12.977
	CRR073301	Leaf 2	14.648
	CRR073302	Leaf 3	10.530
	CRR073303	Juvenile bud 1	10.760
	CRR073304	Juvenile bud 2	6.804
	CRR073305	Juvenile bud 3	16.362
	CRR073306	Third green 1	2.149
	CRR073307	Third green 2	1.809
	CRR073308	Third green 3	2.599
	CRR073309	Second white 1	2.740
	CRR073310	Second white 2	2.643
	CRR073311	Second white 3	2.301
	CRR073312	Silver flowering 1	3.048
	CRR073313	Silver flowering 2	2.224
	CRR073314	Silver flowering 3	1.291
	CRR073315	Gold flowering 1	15.426
	CRR073316	Gold flowering 2	24.582
	CRR073317	Gold flowering 3	18.439
	CRR073318	Tawny withering 1	12.270
	CRR073319	Tawny withering 2	4.261
	CRR073320	Tawny withering 3	11.844