Detail information of GWHGAAZE030902


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011073436.10PREDICTED: phospholipase D alpha 1 [Sesamum indicum]
COGYP_003981721.13E-35phospholipase D
Swissprottr|P93400|PLDA1_TOBAC0Phospholipase D alpha 1
trEMBLtr|A0A068TPA0|A0A068TPA0_COFCA0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}
TAIR10AT3G15730.10phospholipase D alpha 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5010825350112271-
GWHAAZE00000009mRNA5010825350112271-
GWHAAZE00000009exon5010825350108686-
GWHAAZE00000009exon5010901350110915-
GWHAAZE00000009exon5011217950112271-
GWHAAZE00000009CDS5011217950112271-
GWHAAZE00000009CDS5010901350110915-
GWHAAZE00000009CDS5010825350108686-
Transcript Sequence

Network for GWHGAAZE030902

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00168.31C281271.70E-14
PF00614.23PLDc3263651.70E-10
PF00614.23PLDc6566821.30E-07
PF12357.9PLD_C7277996.40E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01115PLD1_2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Parathyroid hormone synthesis, secretion and actionmap04928
Glutamatergic synapsemap04724

Gene Ontology

GO term OntologyName
GO:0046470biological_processphosphatidylcholine metabolic process
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0004630molecular_functionphospholipase D activity
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf201.542
SRR3591706second leaf75.626
SRR3591707mature leaf62.768
SRR3591708Shoot apex107.898
SRR3591709Stem145.280
SRR3591710White floral bud138.714
SRR3591711White flower121.607
SRR3591712Green floral bud148.334
SRR3591713Yellow flower89.388
SRP173429 SRR8316895Juvenile bud stage 89.803
SRR8316896Juvenile bud stage 109.984
SRR8316897Juvenile bud stage 52.611
SRR8316894Third green stage 49.462
SRR8316900Third green stage 179.345
SRR8316901Third green stage 153.947
SRR8316898Complete white stage 94.595
SRR8316899Complete white stage 270.235
SRR8316903Complete white stage 126.855
SRR8316902Silver flowering stage54.457
SRR8316904Silver flowering stage76.420
SRR8316905Silver flowering stage37.354
SRR8316906Gold flowering stage 113.137
SRR8316907Gold flowering stage 109.665
SRR8316908Gold flowering stage 108.534
SRP132670SRR6706286Control201.082
SRR6706287Light intensity 50%203.952
SRR6706288Light intensity 20%225.196
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1100.746
CNS0095593Slightly white alabastrum(diploid) 2118.610
CNS0095594Slightly white alabastrum(diploid) 389.856
CNS0095595Whole white alabastrum(diploid) 2102.662
CNS0095596Whole white alabastrum(diploid) 392.874
CNS0095597Whole white alabastrum(diploid) 4109.737
CNS0095598Silvery flower (diploied) 1124.351
CNS0095599Silvery flower (diploied) 2131.449
CNS0095600Silvery flower (diploied) 3226.503
CNS0095601Golden flower (diploid) 1112.917
CNS0095602Golden flower (diploid) 2213.422
CNS0095603Golden flower (diploid) 3202.222
CNS0095604Slightly white alabastrum(tetraploid) 1112.511
CNS0095605Slightly white alabastrum(tetraploid) 286.176
CNS0095606Slightly white alabastrum(tetraploid) 3244.249
CNS0095607Whole white alabastrum(tetraploid) 172.589
CNS0095608Whole white alabastrum(tetraploid) 271.100
CNS0095609Whole white alabastrum(tetraploid) 3193.099
CNS0095610Silvery flower (tetraploid) 1195.703
CNS0095611Silvery flower (tetraploid) 2222.516
CNS0095612Silvery flower (tetraploid) 3175.440
CNS0095613Golden flower (tetraploid) 191.555
CNS0095614Golden flower (tetraploid) 2162.530
CNS0095615Golden flower (tetraploid) 3102.225
CRA001975CRR073297Stem 1210.832
CRR073298Stem 2211.503
CRR073299Stem 3210.137
CRR073300Leaf 1301.788
CRR073301Leaf 2304.439
CRR073302Leaf 3257.078
CRR073303Juvenile bud 1368.784
CRR073304Juvenile bud 2300.677
CRR073305Juvenile bud 3462.254
CRR073306Third green 1154.352
CRR073307Third green 2134.277
CRR073308Third green 3143.495
CRR073309Second white 1192.373
CRR073310Second white 2107.643
CRR073311Second white 397.382
CRR073312Silver flowering 1105.192
CRR073313Silver flowering 2127.885
CRR073314Silver flowering 390.323
CRR073315Gold flowering 189.807
CRR073316Gold flowering 2116.147
CRR073317Gold flowering 3129.253
CRR073318Tawny withering 1201.052
CRR073319Tawny withering 2160.059
CRR073320Tawny withering 3184.287