Gene detail

Detail information of GWHGAAZE030787

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU24479.1	0	hypothetical protein MIMGU_mgv1a006812mg [Erythranthe guttata]
Swissprot	tr\|Q9SDS7\|VATC_ARATH	4E-172	V-type proton ATPase subunit C
trEMBL	tr\|A0A022QA71\|A0A022QA71_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU24479.1}
TAIR10	AT1G12840.1	3E-138	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48452066	48461806	+
GWHAAZE00000009	mRNA	48452066	48461806	+
GWHAAZE00000009	exon	48452066	48452101	+
GWHAAZE00000009	exon	48452309	48452436	+
GWHAAZE00000009	exon	48452528	48452627	+
GWHAAZE00000009	exon	48456417	48456484	+
GWHAAZE00000009	exon	48456878	48457019	+
GWHAAZE00000009	exon	48457211	48457327	+
GWHAAZE00000009	exon	48457484	48457609	+
GWHAAZE00000009	exon	48458721	48458804	+
GWHAAZE00000009	exon	48458910	48458989	+
GWHAAZE00000009	exon	48460922	48460984	+
GWHAAZE00000009	exon	48461710	48461806	+
GWHAAZE00000009	CDS	48452066	48452101	+
GWHAAZE00000009	CDS	48452309	48452436	+
GWHAAZE00000009	CDS	48452528	48452627	+
GWHAAZE00000009	CDS	48456417	48456484	+
GWHAAZE00000009	CDS	48456878	48457019	+
GWHAAZE00000009	CDS	48457211	48457327	+
GWHAAZE00000009	CDS	48457484	48457609	+
GWHAAZE00000009	CDS	48458721	48458804	+
GWHAAZE00000009	CDS	48458910	48458989	+
GWHAAZE00000009	CDS	48460922	48460984	+
GWHAAZE00000009	CDS	48461710	48461806	+

Transcript Sequence
>GWHTAAZE030821 CAACATCCTAAATCACTCAGCGATGATCTTATCAAGTCAAATAGCTTTATTGAAGGTGTTTCTCACAAGACACGGCATCAGATCGAAGAATTGGAAAGGGTTTCTGGTGTCATCCGTACTCCCTTGAGGGTTGATGGGATTCCTGTTGATTCTTACCTTACTAGATTTGTGTGGGACGAGGCCAAGTATCCCACAGTGTCTCCTCTTAAGAAGATTTTGGATGGCATTCATGTACAAGTGGCCAACATAGAGGATGATCTTAAGGTTCGTGTTGCTGAGTATAACAATGTGCGCAGCCAACTCAATACCATAAACAGAAAGCAGACTGGAAGTTTAGTTGTTTGTGATCTTTCTACTTTAGTGAAGCCAACGGATATTATCACCACAGAGCATTTAGTTACCCTCCTTGCTGTTGTTCCCAAGTATTCCCAGAAGGATTGGTTGTCAAGTTACGAGACCATCACTACCTATGTGGTCCCTAGATCCTCCAAGAAGCTGTATGAGGAAAATGAATATGCTCTTTATACTGTGACTTTATTCAGTTGTGATGCTGACAATTTCAGAACAAAGGCACGCGAAAGAGATTTTCAAATTCGTGATTTTGAATATAATTCAGAAACACAAGAAACTTGGAAGCAGGAGATAGAAAAACTGATGCAAAACCAGGATGCATTAAGAACCTTCCTTTTGCAATGGTGCTATACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGCGTCTTTTCAGAGAGCATTCTGAGGTATGGGTTACCACCATCATTCTTGTCGGTTGTAGTGGCACCTACTGTGAAAAGCGAAAAGAAAGTCCGTTCTATCCTGGAGGGACTGTGTGACAGTTCAAATAGAGGGAGACGTAGTGGTCGTGCGCCGGAGGGAGACGAAGACGGAGAGAGAGTGGTCGGTCGTACCACGTTCTGGAAAAGTGAGGATGAAGGAAGCATGGGTGGTTTTGGAGGTGATGCGGACGCATATTCTTATGTCTCATTCACCGTAAATCTAATCTGA

Network for GWHGAAZE030787

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03223.16	V-ATPase_C	5	300	9.10E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02148	ATPeV1C, ATP6C	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		mTOR signaling pathway	map04150
		Phagosome	map04145
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0033180	cellular_component	proton-transporting V-type ATPase, V1 domain
GO:0015078	molecular_function	proton transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.320
	SRR3591706	second leaf	1.461
	SRR3591707	mature leaf	1.484
	SRR3591708	Shoot apex	2.235
	SRR3591709	Stem	4.722
	SRR3591710	White floral bud	3.190
	SRR3591711	White flower	2.508
	SRR3591712	Green floral bud	3.319
	SRR3591713	Yellow flower	3.773
SRP173429	SRR8316895	Juvenile bud stage	0.694
	SRR8316896	Juvenile bud stage	2.116
	SRR8316897	Juvenile bud stage	1.146
	SRR8316894	Third green stage	0.814
	SRR8316900	Third green stage	2.697
	SRR8316901	Third green stage	2.445
	SRR8316898	Complete white stage	2.565
	SRR8316899	Complete white stage	2.365
	SRR8316903	Complete white stage	3.029
	SRR8316902	Silver flowering stage	1.950
	SRR8316904	Silver flowering stage	2.413
	SRR8316905	Silver flowering stage	0.928
	SRR8316906	Gold flowering stage	2.151
	SRR8316907	Gold flowering stage	2.492
	SRR8316908	Gold flowering stage	2.530
SRP132670	SRR6706286	Control	0.725
	SRR6706287	Light intensity 50%	1.377
	SRR6706288	Light intensity 20%	0.999
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.848
	CNS0095593	Slightly white alabastrum(diploid) 2	1.332
	CNS0095594	Slightly white alabastrum(diploid) 3	2.044
	CNS0095595	Whole white alabastrum(diploid) 2	3.232
	CNS0095596	Whole white alabastrum(diploid) 3	3.723
	CNS0095597	Whole white alabastrum(diploid) 4	2.921
	CNS0095598	Silvery flower (diploied) 1	2.503
	CNS0095599	Silvery flower (diploied) 2	1.407
	CNS0095600	Silvery flower (diploied) 3	1.469
	CNS0095601	Golden flower (diploid) 1	0.899
	CNS0095602	Golden flower (diploid) 2	0.891
	CNS0095603	Golden flower (diploid) 3	0.871
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.691
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.596
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.431
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.929
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.576
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.644
	CNS0095610	Silvery flower (tetraploid) 1	2.756
	CNS0095611	Silvery flower (tetraploid) 2	2.444
	CNS0095612	Silvery flower (tetraploid) 3	8.279
	CNS0095613	Golden flower (tetraploid) 1	1.471
	CNS0095614	Golden flower (tetraploid) 2	2.116
	CNS0095615	Golden flower (tetraploid) 3	2.204
CRA001975	CRR073297	Stem 1	0.840
	CRR073298	Stem 2	0.967
	CRR073299	Stem 3	0.476
	CRR073300	Leaf 1	1.453
	CRR073301	Leaf 2	1.175
	CRR073302	Leaf 3	0.355
	CRR073303	Juvenile bud 1	0.635
	CRR073304	Juvenile bud 2	0.291
	CRR073305	Juvenile bud 3	0.925
	CRR073306	Third green 1	1.012
	CRR073307	Third green 2	1.067
	CRR073308	Third green 3	1.508
	CRR073309	Second white 1	0.409
	CRR073310	Second white 2	0.993
	CRR073311	Second white 3	0.514
	CRR073312	Silver flowering 1	0.573
	CRR073313	Silver flowering 2	0.066
	CRR073314	Silver flowering 3	0.370
	CRR073315	Gold flowering 1	0.056
	CRR073316	Gold flowering 2	1.384
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.241
	CRR073319	Tawny withering 2	0.055
	CRR073320	Tawny withering 3	0.655