Detail information of GWHGAAZE030752


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrBAN92364.10acetolactate synthase [Bacopa rotundifolia]
COGYP_001941018.10Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme
Swissprottr|P09114|ILVB2_TOBAC0Acetolactate synthase 2, chloroplastic (Precursor)
trEMBLtr|U3TM54|U3TM54_9LAMI0Acetolactate synthase {ECO:0000256|RuleBase:RU003591}
TAIR10AT3G48560.10chlorsulfuron/imidazolinone resistant 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4796803247970014-
GWHAAZE00000009mRNA4796803247970014-
GWHAAZE00000009exon4796959147970014-
GWHAAZE00000009exon4796803247969464-
GWHAAZE00000009CDS4796959147970014-
GWHAAZE00000009CDS4796803247969464-
Transcript Sequence

Network for GWHGAAZE030752

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02776.19TPP_enzyme_N1382091.40E-12
PF00205.23TPP_enzyme_M2383703.50E-45
PF02775.22TPP_enzyme_C4325872.30E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01652E2.2.1.6L, ilvB, ilvG, ilvI Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Butanoate metabolismmap00650
C5-Branched dibasic acid metabolismmap00660
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName
GO:0009082biological_processbranched-chain amino acid biosynthetic process
GO:0000287molecular_functionmagnesium ion binding
GO:0030976molecular_functionthiamine pyrophosphate binding
GO:0003984molecular_functionacetolactate synthase activity
GO:0050660molecular_functionflavin adenine dinucleotide binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf64.429
SRR3591706second leaf124.985
SRR3591707mature leaf152.003
SRR3591708Shoot apex90.284
SRR3591709Stem45.483
SRR3591710White floral bud78.392
SRR3591711White flower97.998
SRR3591712Green floral bud86.266
SRR3591713Yellow flower166.599
SRP173429 SRR8316895Juvenile bud stage 63.085
SRR8316896Juvenile bud stage 76.551
SRR8316897Juvenile bud stage 45.071
SRR8316894Third green stage 29.807
SRR8316900Third green stage 91.602
SRR8316901Third green stage 79.030
SRR8316898Complete white stage 16.128
SRR8316899Complete white stage 64.119
SRR8316903Complete white stage 34.037
SRR8316902Silver flowering stage17.685
SRR8316904Silver flowering stage22.158
SRR8316905Silver flowering stage12.523
SRR8316906Gold flowering stage 48.081
SRR8316907Gold flowering stage 48.692
SRR8316908Gold flowering stage 66.150
SRP132670SRR6706286Control85.693
SRR6706287Light intensity 50%79.013
SRR6706288Light intensity 20%81.830
CNP0000432CNS0095592Slightly white alabastrum(diploid) 164.059
CNS0095593Slightly white alabastrum(diploid) 253.155
CNS0095594Slightly white alabastrum(diploid) 360.961
CNS0095595Whole white alabastrum(diploid) 253.056
CNS0095596Whole white alabastrum(diploid) 352.116
CNS0095597Whole white alabastrum(diploid) 443.109
CNS0095598Silvery flower (diploied) 182.153
CNS0095599Silvery flower (diploied) 283.470
CNS0095600Silvery flower (diploied) 388.166
CNS0095601Golden flower (diploid) 180.736
CNS0095602Golden flower (diploid) 2137.793
CNS0095603Golden flower (diploid) 3135.080
CNS0095604Slightly white alabastrum(tetraploid) 182.541
CNS0095605Slightly white alabastrum(tetraploid) 270.725
CNS0095606Slightly white alabastrum(tetraploid) 3130.453
CNS0095607Whole white alabastrum(tetraploid) 145.647
CNS0095608Whole white alabastrum(tetraploid) 242.266
CNS0095609Whole white alabastrum(tetraploid) 3111.915
CNS0095610Silvery flower (tetraploid) 169.490
CNS0095611Silvery flower (tetraploid) 283.738
CNS0095612Silvery flower (tetraploid) 383.617
CNS0095613Golden flower (tetraploid) 164.564
CNS0095614Golden flower (tetraploid) 2119.764
CNS0095615Golden flower (tetraploid) 360.577
CRA001975CRR073297Stem 1113.951
CRR073298Stem 2112.665
CRR073299Stem 3140.234
CRR073300Leaf 194.533
CRR073301Leaf 290.931
CRR073302Leaf 393.036
CRR073303Juvenile bud 187.886
CRR073304Juvenile bud 262.436
CRR073305Juvenile bud 390.135
CRR073306Third green 170.887
CRR073307Third green 229.140
CRR073308Third green 343.833
CRR073309Second white 154.003
CRR073310Second white 238.501
CRR073311Second white 334.563
CRR073312Silver flowering 167.688
CRR073313Silver flowering 299.535
CRR073314Silver flowering 372.594
CRR073315Gold flowering 1164.516
CRR073316Gold flowering 2195.469
CRR073317Gold flowering 3232.584
CRR073318Tawny withering 158.906
CRR073319Tawny withering 252.509
CRR073320Tawny withering 346.434