Detail information of GWHGAAZE030739


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008374260.10PREDICTED: SWI/SNF complex component SNF12 homolog [Malus domestica]
Swissprottr|Q9FMT4|SNF12_ARATH0SWI/SNF complex component SNF12 homolog
trEMBLtr|M5WCP9|M5WCP9_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ11076.1}
TAIR10AT5G14170.13E-172SWIB/MDM2 domain superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4783727147839656+
GWHAAZE00000009mRNA4783727147839656+
GWHAAZE00000009exon4783727147838832+
GWHAAZE00000009exon4783958147839656+
GWHAAZE00000009CDS4783727147838832+
GWHAAZE00000009CDS4783958147839656+
Transcript Sequence

Network for GWHGAAZE030739

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02201.19SWIB3283984.20E-20
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
K11650SMARCD Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.685
SRR3591706second leaf13.601
SRR3591707mature leaf14.540
SRR3591708Shoot apex23.491
SRR3591709Stem13.619
SRR3591710White floral bud19.631
SRR3591711White flower27.708
SRR3591712Green floral bud21.056
SRR3591713Yellow flower35.754
SRP173429 SRR8316895Juvenile bud stage 14.695
SRR8316896Juvenile bud stage 18.005
SRR8316897Juvenile bud stage 8.274
SRR8316894Third green stage 8.565
SRR8316900Third green stage 17.508
SRR8316901Third green stage 18.805
SRR8316898Complete white stage 7.678
SRR8316899Complete white stage 27.683
SRR8316903Complete white stage 17.652
SRR8316902Silver flowering stage7.704
SRR8316904Silver flowering stage12.718
SRR8316905Silver flowering stage5.046
SRR8316906Gold flowering stage 17.011
SRR8316907Gold flowering stage 17.816
SRR8316908Gold flowering stage 21.948
SRP132670SRR6706286Control14.142
SRR6706287Light intensity 50%15.016
SRR6706288Light intensity 20%14.705
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.698
CNS0095593Slightly white alabastrum(diploid) 213.436
CNS0095594Slightly white alabastrum(diploid) 313.042
CNS0095595Whole white alabastrum(diploid) 210.825
CNS0095596Whole white alabastrum(diploid) 310.506
CNS0095597Whole white alabastrum(diploid) 47.112
CNS0095598Silvery flower (diploied) 117.671
CNS0095599Silvery flower (diploied) 212.122
CNS0095600Silvery flower (diploied) 324.653
CNS0095601Golden flower (diploid) 113.012
CNS0095602Golden flower (diploid) 226.575
CNS0095603Golden flower (diploid) 325.379
CNS0095604Slightly white alabastrum(tetraploid) 113.865
CNS0095605Slightly white alabastrum(tetraploid) 210.351
CNS0095606Slightly white alabastrum(tetraploid) 330.937
CNS0095607Whole white alabastrum(tetraploid) 19.704
CNS0095608Whole white alabastrum(tetraploid) 26.808
CNS0095609Whole white alabastrum(tetraploid) 315.035
CNS0095610Silvery flower (tetraploid) 121.089
CNS0095611Silvery flower (tetraploid) 219.467
CNS0095612Silvery flower (tetraploid) 322.163
CNS0095613Golden flower (tetraploid) 115.369
CNS0095614Golden flower (tetraploid) 220.007
CNS0095615Golden flower (tetraploid) 325.763
CRA001975CRR073297Stem 120.803
CRR073298Stem 218.998
CRR073299Stem 321.947
CRR073300Leaf 119.795
CRR073301Leaf 218.471
CRR073302Leaf 316.048
CRR073303Juvenile bud 116.627
CRR073304Juvenile bud 215.186
CRR073305Juvenile bud 324.068
CRR073306Third green 110.889
CRR073307Third green 210.032
CRR073308Third green 312.858
CRR073309Second white 117.312
CRR073310Second white 218.213
CRR073311Second white 317.922
CRR073312Silver flowering 125.520
CRR073313Silver flowering 227.273
CRR073314Silver flowering 321.281
CRR073315Gold flowering 19.662
CRR073316Gold flowering 215.397
CRR073317Gold flowering 317.791
CRR073318Tawny withering 119.046
CRR073319Tawny withering 215.256
CRR073320Tawny withering 316.166