Gene detail

Detail information of GWHGAAZE030732

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN81787.1	0	hypothetical protein VITISV_026006 [Vitis vinifera]
COG	YP_005268665.1	9E-84	ribonuclease J
Swissprot	tr\|Q8GUU3\|CPS3B_ARATH	0.000002	Cleavage and polyadenylation specificity factor subunit 3-II
trEMBL	tr\|A5C3R9\|A5C3R9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81787.1}
TAIR10	AT5G63420.1	0	RNA-metabolising metallo-beta-lactamase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47749531	47757784	+
GWHAAZE00000009	mRNA	47749531	47757784	+
GWHAAZE00000009	exon	47749531	47749697	+
GWHAAZE00000009	exon	47750152	47750275	+
GWHAAZE00000009	exon	47751061	47751117	+
GWHAAZE00000009	exon	47751231	47751422	+
GWHAAZE00000009	exon	47751492	47751569	+
GWHAAZE00000009	exon	47751765	47751947	+
GWHAAZE00000009	exon	47752048	47752128	+
GWHAAZE00000009	exon	47752319	47752384	+
GWHAAZE00000009	exon	47752493	47752585	+
GWHAAZE00000009	exon	47753150	47753263	+
GWHAAZE00000009	exon	47753741	47753838	+
GWHAAZE00000009	exon	47753918	47754295	+
GWHAAZE00000009	exon	47756579	47756797	+
GWHAAZE00000009	exon	47756908	47757034	+
GWHAAZE00000009	exon	47757201	47757784	+
GWHAAZE00000009	CDS	47749531	47749697	+
GWHAAZE00000009	CDS	47750152	47750275	+
GWHAAZE00000009	CDS	47751061	47751117	+
GWHAAZE00000009	CDS	47751231	47751422	+
GWHAAZE00000009	CDS	47751492	47751569	+
GWHAAZE00000009	CDS	47751765	47751947	+
GWHAAZE00000009	CDS	47752048	47752128	+
GWHAAZE00000009	CDS	47752319	47752384	+
GWHAAZE00000009	CDS	47752493	47752585	+
GWHAAZE00000009	CDS	47753150	47753263	+
GWHAAZE00000009	CDS	47753741	47753838	+
GWHAAZE00000009	CDS	47753918	47754295	+
GWHAAZE00000009	CDS	47756579	47756797	+
GWHAAZE00000009	CDS	47756908	47757034	+
GWHAAZE00000009	CDS	47757201	47757296	+
GWHAAZE00000009	three_prime_UTR	47757297	47757784	+

Transcript Sequence
>GWHTAAZE030766 ATGGAAGACTCTGTTCAGCGTAAGATGGAAAAATTCTATGAAGGGTCTGACGGCCCACCTATACGGGTTCTGCCAATTGGAGGCCTTGGAGAAATTGGGATGAATTGCATGCTTGTTGGGAATTATGATCGATATATCCTAATTGATGCCGGTATCATGTTTCCAGACTATGACGAGCTTGGTGTCCAGAAAATTATACCTGATACATCATTTATCAAGAAATGGAGCCATAAAATTGAAGCAGTTGTTATAACACATGGACATGAAGATCACATTGGTGCACTGCCGTGGGTTATTCCAGCTTTGGATTCTCGCACGCCGATATTTGCATCATCCTTTACAATGGAGCTTATTAAGAAACGTTTGAAGGAGTTTGGGATCTTTGTTCCATCTAGGCTTAAGATGTTTAGAACAAAGAAGAGATTCACTGCTGGGCCTTTTGAAATAGAACCAATCAGAGTCACCCATTCTATTCCTGATTGTAGTGGATTGGTTCTCCGCTGTGCTGATGGCACCATTCTTCATACGGGGGATTGGAAGATTGACGAGTCACCACTGGATGGGAAGGTTTTTGATCGTGAAGCGCTAGAAGAACTCTCAAAGGAAGGTGTAACATTAATGATGAGTGACTCAACAAATGTACTGTCACCTGGGAGGACTCTTAGTGAGACTGTTGTAAGAAATTCATTGTTGAGGAATATTTCATCTGTGAAAGGAAGAGTTATTACTACTCAGTTTGCATCAAATATCCATCGGCTTGGAAGTGTAAAAGCTGCAGCTGATTTAACTGGAAGAAAGTTGGTATTTGTTGGCATGTCCTTGAGGACATACCTTGAGGCTGCATGGAGGGATGGAAAAGCACCAATTGATCCCTCGACTCTGTTGAAGGTGGAAGATATTGATGGTTACGCCCCAAAAGATCTGCTAATTGTGACAACTGGCTCTCAAGCAGAACCACGTGCAGCACTGAATCTTGCATCATATGGAAGTAGTCATACGCTCAAATTGAGCAAAGATGATGTAATATTATACTCTGCTAAGGAGGAAGTGCTGAGAATTGTGAAGCCACAACATTTTTTACCCATTCATGGAGAACTATTATTCCTGAAGGAACACGAATTGCTTGGAAGGTCCACTGGCATTCATCACACTGCTTTGATGTATAGCGATGGTGACAAAGCATTCGGCACATCTACTGAGCTTTGTGTTGATGAGAGACTAAAAATTGCTTCCGATGGCATAGTAGTTGTCAGCATGGAAATCTTACGCCCTCAAAATGCTGAGGATTTTGAAAAAACCTTGAAAGGAAAAATAAGAATAACTACTCGTTGTTTATGGCTCGACAAAGGCAAGCTTTTGGATGCTCTCCATAAAGCTGCACATGCTGCACTATCAAGCTGTCCTGTGAACTGTCCTCTAGCACACATGGAAAGAATTGTTTCCGAGGTTTTGAGGAAAATGGTAAGGAAATACAGTAGTAAAAGACCTGAAGTTATTGCGATTGCCATAGAAAACCCAGCAGCAGTTCTTGCTGATGAGATTAACGGGAAATTATCGGGAAAGTCACATGTTGGTTTTGGGATATCAGCATTGAGAAAAGCGGTGGATGGACAACATCTGAAAAAGAAACGGTCGAGGTATCGATCTGCAGGGACTTTACCAGAGGAAGACACTAGTTCAACTTCTGACTCAGCAGAGGCCTTGTCACGAAGTTCTGAAGAGACTGAAGATTTCTGGAAATCATTTGTAGTGCCATCGCCTATTGATCAATCAAGAAAGATAGCAACCCTTCTATTGCGGAAGAAGGGGAGAAACCCAAGAAAGAGAGCAGTGAAAATGTGTACTCGGATATTCCAAGTCGTGAGGGGAAGAATGGCCCTTTGGGAAGAGATTTCAGCAAACTTGTTGGCTAATGGAATTACTCGAAGTCCGGGACAATGCAAATCTCTATGGACATCTCTGATTCAGAAATACGAGGAAAGTAAGGAAGACGAGGAAAGCAAGAAAAGCTGGCCTTATTTTGAAGACATGAATGAGATCCTGACAAGCTTGGAGCCAACACCCACCAAATAAATGAGAATTTTTTTAAAAGAAAGGGGTCGCTCAAACAGCTTTGGAATCTAGGCAAATGGAATCAAACGTCATCACCCAGATGCAGATTTTAGGCCTTTCGGATTTTACTTTTCATTATTTTGTAGAGGCCAAAAGAATTATTTCCGAAGCTTAGCAATTGGCATAAAGAAGGGCAGGCGCAACATGAAGATGATGATGATACTTTATCAGCATTATTAATATTTCTTCGCGGTAGGAATCTTGTACTAGGAAAGGAACAACAGATGCAGAAAGAATTAAATTTTGTAGCCTTAGAATTTTACAGTAAAGTGCATCAGTTATTTATCATGTTTATTGTTTTTCTTTTGGCAGACTTGAACGTGAGGACAAGGGTGTAATACTCATATTTCAACCACTTAATTATTGTACTAACATCTACCGAATGTGTAATTTTGGCTTCCCACGAGATTCACAGAAAAATTAAAGAGAATTCATTTAATGGATCAAAA

Network for GWHGAAZE030732

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12706.8	Lactamase_B_2	44	180	8.80E-11
PF13837.7	Myb_DNA-bind_4	622	680	8.90E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.861
	SRR3591706	second leaf	14.997
	SRR3591707	mature leaf	17.874
	SRR3591708	Shoot apex	21.268
	SRR3591709	Stem	8.149
	SRR3591710	White floral bud	9.757
	SRR3591711	White flower	15.747
	SRR3591712	Green floral bud	15.119
	SRR3591713	Yellow flower	10.566
SRP173429	SRR8316895	Juvenile bud stage	10.732
	SRR8316896	Juvenile bud stage	12.553
	SRR8316897	Juvenile bud stage	8.536
	SRR8316894	Third green stage	5.338
	SRR8316900	Third green stage	15.875
	SRR8316901	Third green stage	13.073
	SRR8316898	Complete white stage	4.052
	SRR8316899	Complete white stage	17.028
	SRR8316903	Complete white stage	7.157
	SRR8316902	Silver flowering stage	6.257
	SRR8316904	Silver flowering stage	10.887
	SRR8316905	Silver flowering stage	4.307
	SRR8316906	Gold flowering stage	13.900
	SRR8316907	Gold flowering stage	13.741
	SRR8316908	Gold flowering stage	19.666
SRP132670	SRR6706286	Control	9.628
	SRR6706287	Light intensity 50%	10.072
	SRR6706288	Light intensity 20%	11.647
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.784
	CNS0095593	Slightly white alabastrum(diploid) 2	7.848
	CNS0095594	Slightly white alabastrum(diploid) 3	5.531
	CNS0095595	Whole white alabastrum(diploid) 2	7.337
	CNS0095596	Whole white alabastrum(diploid) 3	7.776
	CNS0095597	Whole white alabastrum(diploid) 4	7.214
	CNS0095598	Silvery flower (diploied) 1	14.299
	CNS0095599	Silvery flower (diploied) 2	11.327
	CNS0095600	Silvery flower (diploied) 3	15.116
	CNS0095601	Golden flower (diploid) 1	10.014
	CNS0095602	Golden flower (diploid) 2	13.382
	CNS0095603	Golden flower (diploid) 3	12.130
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.868
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.218
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.448
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.697
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.994
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.249
	CNS0095610	Silvery flower (tetraploid) 1	14.131
	CNS0095611	Silvery flower (tetraploid) 2	15.864
	CNS0095612	Silvery flower (tetraploid) 3	16.247
	CNS0095613	Golden flower (tetraploid) 1	9.338
	CNS0095614	Golden flower (tetraploid) 2	10.988
	CNS0095615	Golden flower (tetraploid) 3	6.697
CRA001975	CRR073297	Stem 1	15.826
	CRR073298	Stem 2	13.710
	CRR073299	Stem 3	11.924
	CRR073300	Leaf 1	9.096
	CRR073301	Leaf 2	7.227
	CRR073302	Leaf 3	6.004
	CRR073303	Juvenile bud 1	7.169
	CRR073304	Juvenile bud 2	3.468
	CRR073305	Juvenile bud 3	6.623
	CRR073306	Third green 1	0.629
	CRR073307	Third green 2	0.345
	CRR073308	Third green 3	0.764
	CRR073309	Second white 1	2.784
	CRR073310	Second white 2	3.514
	CRR073311	Second white 3	3.217
	CRR073312	Silver flowering 1	2.393
	CRR073313	Silver flowering 2	2.198
	CRR073314	Silver flowering 3	2.485
	CRR073315	Gold flowering 1	25.909
	CRR073316	Gold flowering 2	52.364
	CRR073317	Gold flowering 3	16.399
	CRR073318	Tawny withering 1	5.900
	CRR073319	Tawny withering 2	10.853
	CRR073320	Tawny withering 3	8.171