Gene detail

Detail information of GWHGAAZE030731

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008239448.1	5.582E-173	PREDICTED: cycloeucalenol cycloisomerase [Prunus mume]
Swissprot	tr\|Q9M643\|CCI1_ARATH	3E-157	Cycloeucalenol cycloisomerase
trEMBL	tr\|D7SGW0\|D7SGW0_VITVI	2E-171	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15640.3}
TAIR10	AT5G50375.1	2E-122	cyclopropyl isomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47735562	47738861	+
GWHAAZE00000009	mRNA	47735562	47738861	+
GWHAAZE00000009	exon	47735562	47735568	+
GWHAAZE00000009	exon	47735641	47735789	+
GWHAAZE00000009	exon	47736215	47736298	+
GWHAAZE00000009	exon	47737399	47737509	+
GWHAAZE00000009	exon	47737631	47737822	+
GWHAAZE00000009	exon	47738289	47738386	+
GWHAAZE00000009	exon	47738669	47738861	+
GWHAAZE00000009	CDS	47735562	47735568	+
GWHAAZE00000009	CDS	47735641	47735789	+
GWHAAZE00000009	CDS	47736215	47736298	+
GWHAAZE00000009	CDS	47737399	47737509	+
GWHAAZE00000009	CDS	47737631	47737822	+
GWHAAZE00000009	CDS	47738289	47738386	+
GWHAAZE00000009	CDS	47738669	47738861	+

Transcript Sequence
>GWHTAAZE030765 ATGGGCGGTACTGAAGTAGCTTCTTCTTCTTCTAGTTCGAGCCTATGGTTAGCTACCAATCCAAGCAAACAATGGGGCGAATTGTTCTTCCTTCTCTACACTCCTTTTTGGCTCACTCTCAGTCTCGGCATTGTCGTTCCTTACAAGCTCTACGAGAGCTTTACAGAATTGGAGTACTTGTTGCTGGGACTTGTTTCAGCGGTACCTGCTTTCTTAATACCGATGCTAGCTGTTGGAAAGGCCAGTCTCTGGATCATTATATTCAGCTACGTTGGAAATTACTTTTGGACCCATTATTTCTTCACAGTCTTGGGTGCTTCGTATACCTTCCCATCGTGGAAGATGAATAATGTACCACACACAACCTTCCTGCTCACACACGTTTGCTTTTTATTTTACCATGTTACATCAAACTTAACACTACGTAGACTACAGCATTCTGTTGCTGACTTGCCAGAAAAAGTTCAGTGGATTACCAAGGCTGCGTGGATTCTAGCTCTTTCTTATTTTATAGCATACCTGGAGACAATAGCTATTTCAAACTTTCCTTATTACGAGTTCGTGGACCGGGCATCCATGTACACAGTTGGCTCCTTGTTTTATGCTATTTATTTTCTTGTAAGCTTCCCGATGTTTTTGAGGATTGATGAGAAACCTGGTGATCTGTGGGACTTGCCAAGGGTGGCCATTGACGCTTTGGGGGCTGCAATGCTCGTAACAATAATACTTGATTTGTGGCGCATTTTTCTGGGTCCGATTGTTCCTATTCCAGATACAAATCAATGCCTTCAACCCGGGCTGCCTTGGTTTCCGGGACACATCAAAGATATTTGA

Network for GWHGAAZE030731

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08246	CPI1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.037
	SRR3591706	second leaf	55.178
	SRR3591707	mature leaf	30.404
	SRR3591708	Shoot apex	52.932
	SRR3591709	Stem	19.353
	SRR3591710	White floral bud	21.877
	SRR3591711	White flower	16.079
	SRR3591712	Green floral bud	40.351
	SRR3591713	Yellow flower	8.359
SRP173429	SRR8316895	Juvenile bud stage	44.645
	SRR8316896	Juvenile bud stage	45.668
	SRR8316897	Juvenile bud stage	32.981
	SRR8316894	Third green stage	23.646
	SRR8316900	Third green stage	61.490
	SRR8316901	Third green stage	55.901
	SRR8316898	Complete white stage	11.258
	SRR8316899	Complete white stage	57.803
	SRR8316903	Complete white stage	19.563
	SRR8316902	Silver flowering stage	5.740
	SRR8316904	Silver flowering stage	8.930
	SRR8316905	Silver flowering stage	3.015
	SRR8316906	Gold flowering stage	6.607
	SRR8316907	Gold flowering stage	6.897
	SRR8316908	Gold flowering stage	11.494
SRP132670	SRR6706286	Control	32.508
	SRR6706287	Light intensity 50%	38.495
	SRR6706288	Light intensity 20%	44.901
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.245
	CNS0095593	Slightly white alabastrum(diploid) 2	62.444
	CNS0095594	Slightly white alabastrum(diploid) 3	40.090
	CNS0095595	Whole white alabastrum(diploid) 2	45.817
	CNS0095596	Whole white alabastrum(diploid) 3	50.570
	CNS0095597	Whole white alabastrum(diploid) 4	40.587
	CNS0095598	Silvery flower (diploied) 1	49.401
	CNS0095599	Silvery flower (diploied) 2	40.993
	CNS0095600	Silvery flower (diploied) 3	17.396
	CNS0095601	Golden flower (diploid) 1	34.824
	CNS0095602	Golden flower (diploid) 2	18.351
	CNS0095603	Golden flower (diploid) 3	18.778
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.378
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.219
	CNS0095606	Slightly white alabastrum(tetraploid) 3	92.436
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.899
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.333
	CNS0095609	Whole white alabastrum(tetraploid) 3	61.441
	CNS0095610	Silvery flower (tetraploid) 1	31.101
	CNS0095611	Silvery flower (tetraploid) 2	24.681
	CNS0095612	Silvery flower (tetraploid) 3	24.674
	CNS0095613	Golden flower (tetraploid) 1	14.819
	CNS0095614	Golden flower (tetraploid) 2	22.274
	CNS0095615	Golden flower (tetraploid) 3	6.942
CRA001975	CRR073297	Stem 1	38.530
	CRR073298	Stem 2	41.034
	CRR073299	Stem 3	33.866
	CRR073300	Leaf 1	42.525
	CRR073301	Leaf 2	43.547
	CRR073302	Leaf 3	38.437
	CRR073303	Juvenile bud 1	31.155
	CRR073304	Juvenile bud 2	27.641
	CRR073305	Juvenile bud 3	29.694
	CRR073306	Third green 1	3.076
	CRR073307	Third green 2	2.136
	CRR073308	Third green 3	4.973
	CRR073309	Second white 1	3.177
	CRR073310	Second white 2	4.184
	CRR073311	Second white 3	2.551
	CRR073312	Silver flowering 1	0.622
	CRR073313	Silver flowering 2	2.114
	CRR073314	Silver flowering 3	2.799
	CRR073315	Gold flowering 1	11.909
	CRR073316	Gold flowering 2	15.581
	CRR073317	Gold flowering 3	10.693
	CRR073318	Tawny withering 1	20.223
	CRR073319	Tawny withering 2	16.514
	CRR073320	Tawny withering 3	16.946