Detail information of GWHGAAZE030724


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283518.10PREDICTED: nucleolar protein 56-like [Vitis vinifera]
COGYP_003858756.12E-59rRNA biogenesis protein Nop56/Nop58
Swissprottr|O04658|NOP5A_ARATH6E-114Probable nucleolar protein 5-1
trEMBLtr|F6GST1|F6GST1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43316.1}
TAIR10AT1G56110.10homolog of nucleolar protein NOP56

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4767503947678414-
GWHAAZE00000009mRNA4767503947678414-
GWHAAZE00000009exon4767821047678414-
GWHAAZE00000009exon4767717247677386-
GWHAAZE00000009exon4767688847677045-
GWHAAZE00000009exon4767651047676697-
GWHAAZE00000009exon4767618747676439-
GWHAAZE00000009exon4767593847676092-
GWHAAZE00000009exon4767571947675853-
GWHAAZE00000009exon4767519947675515-
GWHAAZE00000009exon4767503947675065-
GWHAAZE00000009CDS4767821047678414-
GWHAAZE00000009CDS4767717247677386-
GWHAAZE00000009CDS4767688847677045-
GWHAAZE00000009CDS4767651047676697-
GWHAAZE00000009CDS4767618747676439-
GWHAAZE00000009CDS4767593847676092-
GWHAAZE00000009CDS4767571947675853-
GWHAAZE00000009CDS4767519947675515-
GWHAAZE00000009CDS4767503947675065-
Transcript Sequence

Network for GWHGAAZE030724

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08156.14NOP5NT4697.70E-20
PF01798.19Nop1774112.10E-83
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14564NOP56 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf77.616
SRR3591706second leaf25.259
SRR3591707mature leaf22.511
SRR3591708Shoot apex135.044
SRR3591709Stem37.639
SRR3591710White floral bud37.897
SRR3591711White flower71.192
SRR3591712Green floral bud74.602
SRR3591713Yellow flower37.136
SRP173429 SRR8316895Juvenile bud stage 61.247
SRR8316896Juvenile bud stage 80.146
SRR8316897Juvenile bud stage 39.067
SRR8316894Third green stage 35.175
SRR8316900Third green stage 103.771
SRR8316901Third green stage 84.014
SRR8316898Complete white stage 6.794
SRR8316899Complete white stage 62.781
SRR8316903Complete white stage 15.931
SRR8316902Silver flowering stage13.612
SRR8316904Silver flowering stage18.285
SRR8316905Silver flowering stage7.697
SRR8316906Gold flowering stage 28.738
SRR8316907Gold flowering stage 24.522
SRR8316908Gold flowering stage 39.018
SRP132670SRR6706286Control91.640
SRR6706287Light intensity 50%85.596
SRR6706288Light intensity 20%94.631
CNP0000432CNS0095592Slightly white alabastrum(diploid) 193.840
CNS0095593Slightly white alabastrum(diploid) 2113.858
CNS0095594Slightly white alabastrum(diploid) 3119.930
CNS0095595Whole white alabastrum(diploid) 287.536
CNS0095596Whole white alabastrum(diploid) 392.015
CNS0095597Whole white alabastrum(diploid) 476.133
CNS0095598Silvery flower (diploied) 164.223
CNS0095599Silvery flower (diploied) 244.192
CNS0095600Silvery flower (diploied) 334.463
CNS0095601Golden flower (diploid) 144.914
CNS0095602Golden flower (diploid) 233.380
CNS0095603Golden flower (diploid) 332.610
CNS0095604Slightly white alabastrum(tetraploid) 171.781
CNS0095605Slightly white alabastrum(tetraploid) 273.260
CNS0095606Slightly white alabastrum(tetraploid) 3127.879
CNS0095607Whole white alabastrum(tetraploid) 137.534
CNS0095608Whole white alabastrum(tetraploid) 238.944
CNS0095609Whole white alabastrum(tetraploid) 389.721
CNS0095610Silvery flower (tetraploid) 142.975
CNS0095611Silvery flower (tetraploid) 242.575
CNS0095612Silvery flower (tetraploid) 321.946
CNS0095613Golden flower (tetraploid) 116.721
CNS0095614Golden flower (tetraploid) 234.207
CNS0095615Golden flower (tetraploid) 313.755
CRA001975CRR073297Stem 1124.630
CRR073298Stem 2113.147
CRR073299Stem 3113.144
CRR073300Leaf 193.462
CRR073301Leaf 2110.781
CRR073302Leaf 3102.698
CRR073303Juvenile bud 193.873
CRR073304Juvenile bud 245.042
CRR073305Juvenile bud 394.375
CRR073306Third green 15.895
CRR073307Third green 26.048
CRR073308Third green 312.018
CRR073309Second white 112.927
CRR073310Second white 213.486
CRR073311Second white 39.216
CRR073312Silver flowering 111.593
CRR073313Silver flowering 216.024
CRR073314Silver flowering 37.683
CRR073315Gold flowering 141.109
CRR073316Gold flowering 252.239
CRR073317Gold flowering 335.122
CRR073318Tawny withering 183.601
CRR073319Tawny withering 272.408
CRR073320Tawny withering 390.907