Gene detail

Detail information of GWHGAAZE030692

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010663058.1	PREDICTED: probable Ufm1-specific protease [Vitis vinifera]
Swissprot	tr\|Q9STL8\|UFSP_ARATH	Probable Ufm1-specific protease
trEMBL	tr\|D7SHD6\|D7SHD6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI14895.3}
TAIR10	AT3G48380.1	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47314998	47325654	+
GWHAAZE00000009	mRNA	47314998	47325654	+
GWHAAZE00000009	exon	47314998	47315175	+
GWHAAZE00000009	exon	47315566	47315934	+
GWHAAZE00000009	exon	47316822	47317090	+
GWHAAZE00000009	exon	47317253	47317340	+
GWHAAZE00000009	exon	47317485	47317660	+
GWHAAZE00000009	exon	47322560	47322650	+
GWHAAZE00000009	exon	47323283	47323405	+
GWHAAZE00000009	exon	47323477	47323524	+
GWHAAZE00000009	exon	47323616	47323692	+
GWHAAZE00000009	exon	47323896	47323984	+
GWHAAZE00000009	exon	47324218	47324329	+
GWHAAZE00000009	exon	47325208	47325310	+
GWHAAZE00000009	exon	47325425	47325654	+
GWHAAZE00000009	CDS	47314998	47315175	+
GWHAAZE00000009	CDS	47315566	47315934	+
GWHAAZE00000009	CDS	47316822	47317090	+
GWHAAZE00000009	CDS	47317253	47317340	+
GWHAAZE00000009	CDS	47317485	47317660	+
GWHAAZE00000009	CDS	47322560	47322650	+
GWHAAZE00000009	CDS	47323283	47323405	+
GWHAAZE00000009	CDS	47323477	47323524	+
GWHAAZE00000009	CDS	47323616	47323692	+
GWHAAZE00000009	CDS	47323896	47323984	+
GWHAAZE00000009	CDS	47324218	47324329	+
GWHAAZE00000009	CDS	47325208	47325310	+
GWHAAZE00000009	CDS	47325425	47325654	+

Transcript Sequence
>GWHTAAZE030726 ATGGACACCACTATTCGAATTCTTTGTCATAAGCTGGTTATCACCAACAACAACGAACCAGGCTGCCTCCAATGGCTAATCGGCTCCCCTTTCTTCCCTCCCTTCACAATTCTCTCCACCTTCAGATGTATCCACTATCTTCCCTCCTCCTTCTCTCCAGATTACTCCAAAGAATCAGATGATATTCGGATGCTGTTGCCGAAGGGGTTCGATGTAATTGGAGCCCTAATTGTTGGAAACGGCTCTGATGATTTCAAACGAATTTCTACTGAGGCTATTAGTGCATCGTCTAAATTGAGGAACTTTCTTTCTGGCAACGTTAATGGGGAAAGTTCGGGAAATCCAGATTTGATTGGAGCTGTGGTGGATTCGAATACCGATGTTCATTTTTGTGTTTCAAGTTCGGAGAATTCGAGTAGATTTGAGATTGTTACTTCAGTTGTATATGATGATCAGCCTGAGAAGTATATTTGGGATACTGGGTGTATACTTCGGTGTAAGCTTCCAATTAAGTTGCCCCTTTATTATCCTGTAAACAGTCCAAAAGATATAGAGGATATATACACGAGTGCAACTGAAGCTGTTGCTTCTAAGTTTAGAGATCAAAAGGTCACATATGTTGTAGAAACACTAAATTTGACTGAACCATCGCCACAGGCGGCCATTGTTCGTGGTGCAGAATTGGATCTCCAGGCAGATCTCTCAAGTGTCAGACTTTCTGAAGAAACTGCTCAAGAATTTGATGCAAAGTCTATATCATGTTCTCAATTTTGTTCAAGAAATAGAGATATCACGATGTTTACTTCCATGGAGGAGAATGCAGATAAAATCCAAGTAAGTGTCCTGCTCAGTAGATCAGAGAATTCTCTGAAACCCATTGCACCTATTGCTGAATATTTTCCAGCCATGGAAGAAGCGAAACTTGTGGTTGTAGATTATAAACTAGAAGTTTTATGTTATGCAACAAAAGATCTTCCATTGACGTGTGCTGTTTCAAAGCTAATTATCCCTGGGTTAGTTGACCAATTACATGCGATGAAGAGGATAATCTTGCCTAATCTCTTGACACAACACCCGCAGCTGTGCCCATATCACTTCAGTCCTCCTGGATTTTTACATCCAATAACTGTTGTCTATGAACAAAGCTACGGGGAGACTGAAATGAAGCAAGTTGAAATTAGGAGATCCCTTCATTCAAGACTGGGATTACCTTTTGATCGTCCTCTACTAAGAATTGCAAATGCCATTAATTTATCTGTAACAAAAGAGAGTACAAAAAACTATATACGAAAAGGTTCCCCTTTGCTCAAGGATGTACATCTTGGAATTCCTGCCAGTGGGGTTCCTGGGGGAGTTGTTTCACAGATTCAAGGTTCTTACGAGTACCATCATTACCTTCAAGACGGATTTAATGACTCGGGCTGGGGTTGTGCTTACCGCTCTCTACAGACTATCATATCCTGGTTTAGACTCCAACACTACACTTCCATTGATGTTCCTTCTCACAGGGAAATACAGCAGTCACTTGTAGAAATTGGTGATAAGGACCCCTCGTTTATAGGGTCATGTGAGTGGATTGGTGCCATTGAATTAAGCTTTGTTTTAGACAAACTACTTGGTGTCAGTTGCAAAGTCATCAATGTGAGATCTGGAGATGAACTGCCTGAAAAATGTCGAGAGCTGGCCTTGCATTTTGAGACCCAGGGAACGCCCATCATGATTGGTGGCGGTGTTCTTGCATATACCCTATTGGGAGTTGATTACAATGAAGCAAGTGGAGATTGTGCATTTCTTATACTCGATCCTCACTATACTGGTACAGACGAGCTCAAGAAAGTTGTAAACGGTGGATGGTGTGGGTGGAAAAGAGCGGTTGATAGCAAGGGAAAGCATTTTTTCTTGCACGATAAGTTTTATAACCTTCTTCTCCCACAGAGGCCCAACATGGTTTAA

Network for GWHGAAZE030692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07910.14	Peptidase_C78	453	642	2.40E-51

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.894
	SRR3591706	second leaf	9.190
	SRR3591707	mature leaf	9.442
	SRR3591708	Shoot apex	12.898
	SRR3591709	Stem	13.558
	SRR3591710	White floral bud	14.055
	SRR3591711	White flower	15.712
	SRR3591712	Green floral bud	18.024
	SRR3591713	Yellow flower	12.663
SRP173429	SRR8316895	Juvenile bud stage	8.563
	SRR8316896	Juvenile bud stage	13.651
	SRR8316897	Juvenile bud stage	6.877
	SRR8316894	Third green stage	6.116
	SRR8316900	Third green stage	18.012
	SRR8316901	Third green stage	15.511
	SRR8316898	Complete white stage	5.060
	SRR8316899	Complete white stage	20.680
	SRR8316903	Complete white stage	10.006
	SRR8316902	Silver flowering stage	4.508
	SRR8316904	Silver flowering stage	8.359
	SRR8316905	Silver flowering stage	3.085
	SRR8316906	Gold flowering stage	10.582
	SRR8316907	Gold flowering stage	10.288
	SRR8316908	Gold flowering stage	11.222
SRP132670	SRR6706286	Control	10.697
	SRR6706287	Light intensity 50%	11.498
	SRR6706288	Light intensity 20%	13.770
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.470
	CNS0095593	Slightly white alabastrum(diploid) 2	8.744
	CNS0095594	Slightly white alabastrum(diploid) 3	11.067
	CNS0095595	Whole white alabastrum(diploid) 2	10.504
	CNS0095596	Whole white alabastrum(diploid) 3	10.102
	CNS0095597	Whole white alabastrum(diploid) 4	8.049
	CNS0095598	Silvery flower (diploied) 1	13.247
	CNS0095599	Silvery flower (diploied) 2	9.312
	CNS0095600	Silvery flower (diploied) 3	11.963
	CNS0095601	Golden flower (diploid) 1	9.331
	CNS0095602	Golden flower (diploid) 2	10.317
	CNS0095603	Golden flower (diploid) 3	9.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.512
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.201
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.924
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.572
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.840
	CNS0095610	Silvery flower (tetraploid) 1	12.638
	CNS0095611	Silvery flower (tetraploid) 2	13.117
	CNS0095612	Silvery flower (tetraploid) 3	13.425
	CNS0095613	Golden flower (tetraploid) 1	7.201
	CNS0095614	Golden flower (tetraploid) 2	12.336
	CNS0095615	Golden flower (tetraploid) 3	8.201
CRA001975	CRR073297	Stem 1	11.769
	CRR073298	Stem 2	9.871
	CRR073299	Stem 3	6.357
	CRR073300	Leaf 1	11.472
	CRR073301	Leaf 2	9.283
	CRR073302	Leaf 3	8.596
	CRR073303	Juvenile bud 1	5.546
	CRR073304	Juvenile bud 2	5.397
	CRR073305	Juvenile bud 3	8.712
	CRR073306	Third green 1	1.886
	CRR073307	Third green 2	1.486
	CRR073308	Third green 3	1.659
	CRR073309	Second white 1	1.861
	CRR073310	Second white 2	3.182
	CRR073311	Second white 3	2.858
	CRR073312	Silver flowering 1	2.039
	CRR073313	Silver flowering 2	2.076
	CRR073314	Silver flowering 3	2.098
	CRR073315	Gold flowering 1	2.527
	CRR073316	Gold flowering 2	5.544
	CRR073317	Gold flowering 3	3.368
	CRR073318	Tawny withering 1	6.994
	CRR073319	Tawny withering 2	6.172
	CRR073320	Tawny withering 3	5.241