Gene detail

Detail information of GWHGAAZE030594

Functional Annotation

Database	Orthologs	Annotation
Nr	BAD16686.1	plasma membrane H+-ATPase [Daucus carota]
COG	YP_005270382.1	plasma-membrane proton-efflux P-type ATPase
Swissprot	tr\|P22180\|PMA1_SOLLC	Plasma membrane ATPase 1
trEMBL	tr\|Q75N99\|Q75N99_DAUCA	Plasma membrane H+-ATPase {ECO:0000313\|EMBL:BAD16686.1}
TAIR10	AT3G47950.1	H(+)-ATPase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45803774	45809400	+
GWHAAZE00000009	mRNA	45803774	45809400	+
GWHAAZE00000009	exon	45803774	45803880	+
GWHAAZE00000009	exon	45803969	45804088	+
GWHAAZE00000009	exon	45804535	45804633	+
GWHAAZE00000009	exon	45804737	45804874	+
GWHAAZE00000009	exon	45805027	45805161	+
GWHAAZE00000009	exon	45805264	45805425	+
GWHAAZE00000009	exon	45805542	45805748	+
GWHAAZE00000009	exon	45805833	45805952	+
GWHAAZE00000009	exon	45806121	45806240	+
GWHAAZE00000009	exon	45806340	45806462	+
GWHAAZE00000009	exon	45806559	45806663	+
GWHAAZE00000009	exon	45806777	45806921	+
GWHAAZE00000009	exon	45807094	45807258	+
GWHAAZE00000009	exon	45807356	45807594	+
GWHAAZE00000009	exon	45807796	45807828	+
GWHAAZE00000009	exon	45807962	45808043	+
GWHAAZE00000009	exon	45808148	45808308	+
GWHAAZE00000009	exon	45808450	45808635	+
GWHAAZE00000009	exon	45808725	45808907	+
GWHAAZE00000009	exon	45808979	45809157	+
GWHAAZE00000009	exon	45809304	45809400	+
GWHAAZE00000009	five_prime_UTR	45803774	45803826	+
GWHAAZE00000009	CDS	45803827	45803880	+
GWHAAZE00000009	CDS	45803969	45804088	+
GWHAAZE00000009	CDS	45804535	45804633	+
GWHAAZE00000009	CDS	45804737	45804874	+
GWHAAZE00000009	CDS	45805027	45805161	+
GWHAAZE00000009	CDS	45805264	45805425	+
GWHAAZE00000009	CDS	45805542	45805748	+
GWHAAZE00000009	CDS	45805833	45805952	+
GWHAAZE00000009	CDS	45806121	45806240	+
GWHAAZE00000009	CDS	45806340	45806462	+
GWHAAZE00000009	CDS	45806559	45806663	+
GWHAAZE00000009	CDS	45806777	45806921	+
GWHAAZE00000009	CDS	45807094	45807258	+
GWHAAZE00000009	CDS	45807356	45807594	+
GWHAAZE00000009	CDS	45807796	45807828	+
GWHAAZE00000009	CDS	45807962	45808043	+
GWHAAZE00000009	CDS	45808148	45808308	+
GWHAAZE00000009	CDS	45808450	45808635	+
GWHAAZE00000009	CDS	45808725	45808907	+
GWHAAZE00000009	CDS	45808979	45809157	+
GWHAAZE00000009	CDS	45809304	45809400	+

Transcript Sequence
>GWHTAAZE030628 GGGTTCTGTTTTAAAATAACAAATTCTGTAGACAGAGAGAAAAAAACAGAGCTATGGGGGACAAATCTGAAGTTCTGGAAGCTGTGTTGAAGGAAACTGTTGATTTGGAGAGTATACCAATTGAGGAGGTTTTTGAGAATCTGAGATGTAGTAAAGAGGGACTCACCTCTGAAGGTGCTCAAGAGAGATTAGTTATTTTTGGGCACAATAAACTTGAGGAGAAGAAGGAAAGCAAATTCTTGAAATTTTTGGGGTTTATGTGGAACCCCCTATCATGGGTTATGGAAGCTGCAGCGATCATGGCAATCGCCCTTGCAAATGGAGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTGGGTATCATAACTTTGCTTGTTATAAACTCGACAATTAGTTTCATCGAAGAGAACAATGCCGGTAATGCAGCAGCTGCTCTCATGGCTCGACTTGCCCCGAAAGCCAAGGTTCTTCGAGATGGAAGGTGGAATGAAGAAGATGCTGCCGTTTTAGTGCCTGGAGATGTTGTCAGTATAAAGCTAGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAGGGCGATCCCCTAAAAATTGATCAGTCTGCCTTGACAGGTGAGTCTCTTCCTGTAACGAAAGGACCTGGGGATGGTGTTTATTCTGGGTCTACTTGCAAACAGGGAGAGATTGAGGCTGTGGTCATTGCAACCGGGGTTCACACCTTTTTTGGAAAGGCGGCTCACCTTGTTGATAGTACTAACCAAGTCTTGACTGCAATTGGAAATTTTTGCATTTGTTCGATTGCTGTGGGGATGATTATAGAGATTATTGTAATGTACCCTATTCAAGATCGGCAGTATCGCCCTGGGATTGACAATCTTCTTGTGCTTCTCATTGGAGGAATTCCAATTGCCATGCCTACGGTTCTATCTGTAACAATGGCCATTGGTTCTCATCGCTTGGCTCAGCAGGGAGCTATAACAAAAAGAATGACTGCAATAGAAGAAATGGCGGGTATGGACGTGCTTTGCAGTGACAAGACTGGAACTCTCACATTGAATAAGCTATCGGTTGACAAGAATCTTATCGAGGTATTTGCCAAAGGAGTCGATGCAGATACTGTTGTTCTGATGGCGGCTCGAGCCTCCCGAGTTGAAAACCAGGATGCAATAGATACTGCTATAGTTGGGATGCTGGCCGATCCAAAGGAGGCCCGTGCTGGCGTTCAAGAAATTCACTTCCTTCCTTTCAATCCTACTGATAAGCGTACAGCATTGACCTATCTTGACAATGAAGGTAAAATGCATAGGGTCAGCAAAGGTGCCCCAGAGCAGATTCTAAATCTTTCACACAATAAGTCAGACATAGGGCGTAGGGTTCATGCTGTGATTGATAAGTTTGCAGAACGAGGTTTGCGGTCACTTGCTGTAGCATACCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTGCTGGAGGTCCGTGGCAGTTTATAGGCCTCATGCCTCTGTTTGATCCACCCAGACACGATAGCGCAGAGACAATAAGGAGGGCCTTAAATCTTGGAGTGAATGTTAAAATGATTACAGGAGATCAATTGGCAATAGGAAAGGAAACTGGCCGCCGTTTGGGGATGGGTACAAACATGTATCCTTCTTCTGCTTTGCTTGGACAGAATAAAGACGAGTCAATTGCAGCTTTACCAATTGATGAACTCATAGAGAAAGCTGACGGTTTTGCTGGTGTTTTCCCTGAGCATAAATATGAGATAGTAAAGAGGTTACAAGCGAGGAAACACATATGTGGAATGACGGGTGATGGAGTTAACGATGCACCTGCACTGAAGAAGGCTGATATCGGGATAGCTGTGGCTGATGCAACTGATGCGGCTCGTAGTGCTTCTGATATTGTCCTTACTGAACCCGGCCTCAGTGTTATCATTAGTGCTGTTTTGACCAGTCGTGCAATTTTCCAGAGGATGAAGAATTATACGATTTATGCAGTATCCATCACAATTCGAATTGTGCTTGGTTTTATGCTGTTGGCCCTAATATGGAAGTTCGACTTTCCACCTTTTATGGTGCTTATCATTGCAATTCTCAACGATGGCACTATCATGACGATATCAAAGGATAGGGTGAAACCGTCTCCTCTGCCAGACAGCTGGAAGCTTGCAGAGATTTTTACAACTGGCATTGTTCTCGGTGGTTACCTGGCCGTGATGACTGTCATATTCTTCTGGGCAGCCTATAAAACAAACTTCTTCCCGCGGGTGTTTGGTGTGCCAACTCTTGAGAAAACAGCACATGACGACTTTAGAAAGCTAGCTTCAGCCATATATCTTCAAGTGAGCACTATCAGTCAAGCCCTCATATTCGTTACACGTTCACGAAGTTGGTCCTTTGTTGAGCGTCCCGGTTTGTTACTCGTTGCGGCTTTCCTTGTGGCTCAATTGATTGCAACTTTGATTGCTGTTTATGCGAACTGGAGCTTTGCTGCAATTGAGGGAATTGGATGGGGTTGGGCAGGCGTGATTTGGCTTTACAATATCATTTTCTACATTCCGCTCGATTTCATAAAGTTCTTTATCCGCTATGCTCTTAGTGGGCGGGCTTGGGATCTTGTTCTTGAGCAAAGGATTGCCTTTACTAGGCAAAAGGATTTTGGGAAGGAACAGCGTGAGCTTCAATGGGCACATGCACAAAGAACGCTTCACGGGCTTGAAGTACCTGACACCAAAATGTTTAATGACCGAACCAATGTATCTGAACTCAATCAGATGGCCGAGGAAGCCAAAAGAAGGGCTGAGATTGCGAGGTTGAGAGAACTACGCACACTAAAAGGTCGTGTTGAATCGGTGGTGAGAATGAAGGGTCTGGACATAGAAACTATTCAGCAAGCTTACACTGTATGA

Network for GWHGAAZE030594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00690.27	Cation_ATPase_N	20	83	5.50E-13
PF00122.21	E1-E2_ATPase	132	305	8.70E-44
PF00702.27	Hydrolase	321	598	3.70E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01535	PMA1, PMA2	Metabolic pathways	map01100
K01535	PMA1, PMA2	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0120029	biological_process	proton export across plasma membrane
GO:0016021	cellular_component	integral component of membrane
GO:0008553	molecular_function	proton-exporting ATPase activity, phosphorylative mechanism
GO:0000166	molecular_function	nucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.645
	SRR3591706	second leaf	24.354
	SRR3591707	mature leaf	97.372
	SRR3591708	Shoot apex	35.298
	SRR3591709	Stem	77.536
	SRR3591710	White floral bud	165.068
	SRR3591711	White flower	143.513
	SRR3591712	Green floral bud	87.595
	SRR3591713	Yellow flower	114.825
SRP173429	SRR8316895	Juvenile bud stage	52.589
	SRR8316896	Juvenile bud stage	70.799
	SRR8316897	Juvenile bud stage	27.809
	SRR8316894	Third green stage	27.498
	SRR8316900	Third green stage	70.469
	SRR8316901	Third green stage	66.288
	SRR8316898	Complete white stage	42.276
	SRR8316899	Complete white stage	96.381
	SRR8316903	Complete white stage	93.099
	SRR8316902	Silver flowering stage	45.262
	SRR8316904	Silver flowering stage	74.841
	SRR8316905	Silver flowering stage	34.864
	SRR8316906	Gold flowering stage	81.585
	SRR8316907	Gold flowering stage	86.285
	SRR8316908	Gold flowering stage	93.649
SRP132670	SRR6706286	Control	105.346
	SRR6706287	Light intensity 50%	94.714
	SRR6706288	Light intensity 20%	93.352
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.425
	CNS0095593	Slightly white alabastrum(diploid) 2	42.420
	CNS0095594	Slightly white alabastrum(diploid) 3	47.558
	CNS0095595	Whole white alabastrum(diploid) 2	47.794
	CNS0095596	Whole white alabastrum(diploid) 3	49.173
	CNS0095597	Whole white alabastrum(diploid) 4	49.107
	CNS0095598	Silvery flower (diploied) 1	102.948
	CNS0095599	Silvery flower (diploied) 2	88.809
	CNS0095600	Silvery flower (diploied) 3	206.621
	CNS0095601	Golden flower (diploid) 1	93.502
	CNS0095602	Golden flower (diploid) 2	174.446
	CNS0095603	Golden flower (diploid) 3	168.430
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.254
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.328
	CNS0095606	Slightly white alabastrum(tetraploid) 3	99.147
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.471
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.554
	CNS0095609	Whole white alabastrum(tetraploid) 3	72.830
	CNS0095610	Silvery flower (tetraploid) 1	190.940
	CNS0095611	Silvery flower (tetraploid) 2	187.762
	CNS0095612	Silvery flower (tetraploid) 3	179.763
	CNS0095613	Golden flower (tetraploid) 1	105.272
	CNS0095614	Golden flower (tetraploid) 2	151.838
	CNS0095615	Golden flower (tetraploid) 3	182.642
CRA001975	CRR073297	Stem 1	95.483
	CRR073298	Stem 2	85.034
	CRR073299	Stem 3	89.966
	CRR073300	Leaf 1	90.861
	CRR073301	Leaf 2	82.146
	CRR073302	Leaf 3	66.498
	CRR073303	Juvenile bud 1	87.564
	CRR073304	Juvenile bud 2	58.870
	CRR073305	Juvenile bud 3	138.279
	CRR073306	Third green 1	47.756
	CRR073307	Third green 2	45.839
	CRR073308	Third green 3	59.538
	CRR073309	Second white 1	55.634
	CRR073310	Second white 2	58.050
	CRR073311	Second white 3	59.806
	CRR073312	Silver flowering 1	55.249
	CRR073313	Silver flowering 2	66.249
	CRR073314	Silver flowering 3	67.654
	CRR073315	Gold flowering 1	39.788
	CRR073316	Gold flowering 2	53.494
	CRR073317	Gold flowering 3	43.782
	CRR073318	Tawny withering 1	48.813
	CRR073319	Tawny withering 2	39.281
	CRR073320	Tawny withering 3	46.676