Gene detail

Detail information of GWHGAAZE030566

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663217.1	0	PREDICTED: alpha-N-acetylglucosaminidase-like [Vitis vinifera]
COG	YP_005009197.1	1E-65	Alpha-N-acetylglucosaminidase, Alpha-L-fucosidase
trEMBL	tr\|F6GSV4\|F6GSV4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43011.1}
TAIR10	AT5G13690.1	0	alpha-N-acetylglucosaminidase family / NAGLU family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45426241	45438077	+
GWHAAZE00000009	mRNA	45426241	45438077	+
GWHAAZE00000009	exon	45426241	45426474	+
GWHAAZE00000009	exon	45427148	45427224	+
GWHAAZE00000009	exon	45428141	45428349	+
GWHAAZE00000009	exon	45428465	45428586	+
GWHAAZE00000009	exon	45430310	45430395	+
GWHAAZE00000009	exon	45430824	45430897	+
GWHAAZE00000009	exon	45432052	45432133	+
GWHAAZE00000009	exon	45432479	45432585	+
GWHAAZE00000009	exon	45432708	45432738	+
GWHAAZE00000009	exon	45432861	45432978	+
GWHAAZE00000009	exon	45433291	45433338	+
GWHAAZE00000009	exon	45433445	45433578	+
GWHAAZE00000009	exon	45434228	45434282	+
GWHAAZE00000009	exon	45434445	45434543	+
GWHAAZE00000009	exon	45436276	45436386	+
GWHAAZE00000009	exon	45436821	45437062	+
GWHAAZE00000009	exon	45437161	45437398	+
GWHAAZE00000009	exon	45437482	45437560	+
GWHAAZE00000009	exon	45437821	45438077	+
GWHAAZE00000009	CDS	45426241	45426474	+
GWHAAZE00000009	CDS	45427148	45427224	+
GWHAAZE00000009	CDS	45428141	45428349	+
GWHAAZE00000009	CDS	45428465	45428586	+
GWHAAZE00000009	CDS	45430310	45430395	+
GWHAAZE00000009	CDS	45430824	45430897	+
GWHAAZE00000009	CDS	45432052	45432133	+
GWHAAZE00000009	CDS	45432479	45432585	+
GWHAAZE00000009	CDS	45432708	45432738	+
GWHAAZE00000009	CDS	45432861	45432978	+
GWHAAZE00000009	CDS	45433291	45433338	+
GWHAAZE00000009	CDS	45433445	45433578	+
GWHAAZE00000009	CDS	45434228	45434282	+
GWHAAZE00000009	CDS	45434445	45434543	+
GWHAAZE00000009	CDS	45436276	45436386	+
GWHAAZE00000009	CDS	45436821	45437062	+
GWHAAZE00000009	CDS	45437161	45437398	+
GWHAAZE00000009	CDS	45437482	45437560	+
GWHAAZE00000009	CDS	45437821	45438077	+

Transcript Sequence
>GWHTAAZE030600 ATGGCTTCTTCTTCTCCTTTTCCGACCATATCTATATCCATATTCATCATCTTCGCTATATTATCAACTGTAGCTCACTCGTCAACCATCGGCGTCAACTACATTTCGCGCCTTCTCGATATTCAGGATCGGGAGAGAGCTCCGGCTTCGGTCCAGCTCTCCGCCTCATACGGCGTTCTTAATCGCTTCATACCTTCGCACTCGTCTAGCTTCGATTTCCAGATTATCTCCAAGGAGCGATGTGGTGGAGAATCTTGCTTTGTTATAAGCAATCATCCTTCTTCCGGTCAACGCCGCACTCCTGAAATTTTAATTAGCGGGCTAACAGGAGTGGAGCTTTTAGCTGGTCTTCATTGGTACTTGAAGAACTGGTGTGGAGCACATATATCATGGAATAAAACTGGTGTACAACTCTCTTCAGTACCTAAGTCAGGCTCTCTCCCTCTTGTTCAAGATGCTGGAGTATTAATACAGAGACCTATTCCTTGGAACTACTACCAGAATGCTGTTACACCTAGCTATTCATCTGCTTGGTGGGACTGGGAAAGATGGGAAAAGGAGATTGACTGGATGGCTCTCCAAGGTATCAATTTGCCATTGGCGTTCACTGGGCAAGAAGCTATTTGGCAAAAAGTTTTCCAGAATTTCAATATTAGCAGTTCGGATTTGGATGATTTCTTTGGAGGGCCTGCATTTCTTGCATGGTCGCGTATGGGAAATTTACATCGCAACAAGTCTTTCTGCTGTGTCTGCAATGTTTTCCTCAAGGAAGTAGTTTCATCCTTCAGGGGAAACTGGACAGTCCTTCCAGCATTTTCTGGAAATGTTCCTGCAGCATTGGTACATGTATTTCCGTCAGCAAAAATAGAGCGCCTGGGAAATTGGTTTACTGTTGGGAGTGACCCTAGATGGTGCTGCACTTACCTTCTTGATGCGACTGATCCCTTGTTCACTGAGCTTGGAAGAGCATTTGTTAGGCAACAATTGAAAGAATATGGAAGGAGTGGCCATATATACAACAGTGATACCTTTGATGAAAACACACCACCTACAGATGACCCAGAGTACATCTCTTCATTAGGTGCTGCAATCTTTAAGGGAATGCAAAGTGGTGATGATGATGCTGTTTGGCTAATGCAGGGATGGCTTTTTCAAGATGATCCATATTGGAGGCCTCCACAAATGAAGGCCCTTCTACATTCTGTTCCCATCGGAAGGATGGTTGTTCTTGATCTGTTTGCTGAAGTGAAACCTGTATGGACTACATCAGAACAGTTTTATGGTGTTCCTTACATCTGGCAAGTTTTGGCCCCACCCCCAAAGTGTATGCTGCACAATTTTGCTGGGAATATTGAGATGTATGGACTTTTAGATGCTGTTGGCGTTGGACTGTCAATGGAAGGTGTTGAACAGAATCCTGTTGTTTATGATCTAATGTCTGAAATGGCATTTCAACATAACAAAATTGATGTGAAGGCATGGATTGATCTATATTCAACAAGACGATATGGGGTTATTGTTCCATCAATGCAAGATGCCTGGAATATATTGTATCACACGGTTTACAATTGCACAGATGGCGCTCCTAACAAAAATAGGGATGTAATTGTGGCATTCCCGGATGTTGATCCATCCTTCATTTCAACACGACAAATGTCAATACTCAAATACCAACAGTATGGCCGACCATTACCTAGGAGGAACTTTCTTAGAGACACGCCCAACTCCTATGACAAACCTCATCTATGGTATGCAACTTCAGAAGTGATACCTGCACTAGAACTTTTCATCAAAAGTGGGAATGAGTTGTTGGAAAGTAATACTTACAGATACGACCTTGTTGACCTGACAAGACAAGTTTTGGCAAAGTATGCGAACCAACTGTTTCTAGATGTCATAGAAGCCTATCGGATAAATGATGCTCACACAGTAAAACTCCAGAGTCAGAAATTTCTTGACCTTGTAAACGATATGGACACACTTTTAGCTTGCCATGAAGGATTTCTACTAGGACCGTGGTTAGAGAGTGCAAAGCAACTTGCCCAAGACAAAGAACAAGAAATACAGTTTGAATGGAATGCAAGAACTCAAATTACCATGTGGTTTGACAACACAGAAGTTGAAGCAAGTCTGCTTCGTGACTACGGAAACAAGTACTGGAGTGGACTTCTACGAGATTACTATGGCCCACGAGCAGCTATATATTTCAAATTTCTGATAGAGAGTCTAGAGAAAGGGGATGGTTTTGGTTTGAAGAGTTGGAGGAGGGAATGGATTAAGCTTACTAATGATTGGCAAAATAGTAGGAAATTATTCCCTGTGGAAAGTGTGGGAGATGCCCTTAATATATCTCGGTGGCTTTACAACAAGTACCTGCAAGATCCTGGCACTTACGATCAGTAA

Network for GWHGAAZE030566

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12971.8	NAGLU_N	55	148	4.80E-22
PF05089.13	NAGLU	165	485	3.30E-97
PF12972.8	NAGLU_C	494	790	9.10E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01205	NAGLU	Metabolic pathways	map01100
		Glycosaminoglycan degradation	map00531
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.238
	SRR3591706	second leaf	1.228
	SRR3591707	mature leaf	1.449
	SRR3591708	Shoot apex	3.504
	SRR3591709	Stem	15.437
	SRR3591710	White floral bud	0.947
	SRR3591711	White flower	1.874
	SRR3591712	Green floral bud	0.298
	SRR3591713	Yellow flower	1.088
SRP173429	SRR8316895	Juvenile bud stage	1.335
	SRR8316896	Juvenile bud stage	1.490
	SRR8316897	Juvenile bud stage	1.167
	SRR8316894	Third green stage	0.772
	SRR8316900	Third green stage	0.516
	SRR8316901	Third green stage	0.485
	SRR8316898	Complete white stage	1.394
	SRR8316899	Complete white stage	1.302
	SRR8316903	Complete white stage	2.200
	SRR8316902	Silver flowering stage	6.214
	SRR8316904	Silver flowering stage	7.162
	SRR8316905	Silver flowering stage	2.253
	SRR8316906	Gold flowering stage	7.749
	SRR8316907	Gold flowering stage	16.215
	SRR8316908	Gold flowering stage	5.852
SRP132670	SRR6706286	Control	0.401
	SRR6706287	Light intensity 50%	0.355
	SRR6706288	Light intensity 20%	0.371
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.843
	CNS0095593	Slightly white alabastrum(diploid) 2	0.415
	CNS0095594	Slightly white alabastrum(diploid) 3	1.164
	CNS0095595	Whole white alabastrum(diploid) 2	0.544
	CNS0095596	Whole white alabastrum(diploid) 3	0.269
	CNS0095597	Whole white alabastrum(diploid) 4	0.655
	CNS0095598	Silvery flower (diploied) 1	6.393
	CNS0095599	Silvery flower (diploied) 2	3.498
	CNS0095600	Silvery flower (diploied) 3	6.480
	CNS0095601	Golden flower (diploid) 1	3.362
	CNS0095602	Golden flower (diploid) 2	8.148
	CNS0095603	Golden flower (diploid) 3	7.877
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.616
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.830
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.553
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.361
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.324
	CNS0095610	Silvery flower (tetraploid) 1	3.868
	CNS0095611	Silvery flower (tetraploid) 2	6.054
	CNS0095612	Silvery flower (tetraploid) 3	4.144
	CNS0095613	Golden flower (tetraploid) 1	0.695
	CNS0095614	Golden flower (tetraploid) 2	7.808
	CNS0095615	Golden flower (tetraploid) 3	0.477
CRA001975	CRR073297	Stem 1	0.641
	CRR073298	Stem 2	0.905
	CRR073299	Stem 3	0.232
	CRR073300	Leaf 1	0.096
	CRR073301	Leaf 2	0.262
	CRR073302	Leaf 3	0.121
	CRR073303	Juvenile bud 1	0.071
	CRR073304	Juvenile bud 2	0.210
	CRR073305	Juvenile bud 3	0.166
	CRR073306	Third green 1	1.146
	CRR073307	Third green 2	0.635
	CRR073308	Third green 3	1.294
	CRR073309	Second white 1	2.962
	CRR073310	Second white 2	3.776
	CRR073311	Second white 3	2.780
	CRR073312	Silver flowering 1	2.401
	CRR073313	Silver flowering 2	1.913
	CRR073314	Silver flowering 3	1.464
	CRR073315	Gold flowering 1	0.878
	CRR073316	Gold flowering 2	0.487
	CRR073317	Gold flowering 3	0.212
	CRR073318	Tawny withering 1	0.559
	CRR073319	Tawny withering 2	1.881
	CRR073320	Tawny withering 3	1.456