Gene detail

Detail information of GWHGAAZE030526

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010663181.1	PREDICTED: serine/threonine-protein kinase ATM isoform X5 [Vitis vinifera]
Swissprot	tr\|Q9M3G7\|ATM_ARATH	Serine/threonine-protein kinase ATM
trEMBL	tr\|V4VK09\|V4VK09_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR53064.1}
TAIR10	AT3G48190.1	ataxia-telangiectasia mutated

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44822748	44844320	+
GWHAAZE00000009	mRNA	44822748	44844320	+
GWHAAZE00000009	exon	44822748	44822796	+
GWHAAZE00000009	exon	44823014	44823088	+
GWHAAZE00000009	exon	44823895	44824025	+
GWHAAZE00000009	exon	44824665	44824706	+
GWHAAZE00000009	exon	44824853	44824923	+
GWHAAZE00000009	exon	44825221	44825269	+
GWHAAZE00000009	exon	44827302	44827373	+
GWHAAZE00000009	exon	44828631	44828786	+
GWHAAZE00000009	exon	44828851	44828940	+
GWHAAZE00000009	exon	44829039	44829226	+
GWHAAZE00000009	exon	44829791	44830394	+
GWHAAZE00000009	exon	44830513	44830584	+
GWHAAZE00000009	exon	44830722	44830886	+
GWHAAZE00000009	exon	44835681	44835806	+
GWHAAZE00000009	exon	44836074	44836201	+
GWHAAZE00000009	exon	44836991	44837147	+
GWHAAZE00000009	exon	44842031	44842077	+
GWHAAZE00000009	exon	44842148	44842211	+
GWHAAZE00000009	exon	44842387	44842461	+
GWHAAZE00000009	exon	44842557	44842676	+
GWHAAZE00000009	exon	44843021	44843206	+
GWHAAZE00000009	exon	44843755	44843876	+
GWHAAZE00000009	exon	44843965	44844034	+
GWHAAZE00000009	exon	44844189	44844320	+
GWHAAZE00000009	CDS	44822748	44822796	+
GWHAAZE00000009	CDS	44823014	44823088	+
GWHAAZE00000009	CDS	44823895	44824025	+
GWHAAZE00000009	CDS	44824665	44824706	+
GWHAAZE00000009	CDS	44824853	44824923	+
GWHAAZE00000009	CDS	44825221	44825269	+
GWHAAZE00000009	CDS	44827302	44827373	+
GWHAAZE00000009	CDS	44828631	44828786	+
GWHAAZE00000009	CDS	44828851	44828940	+
GWHAAZE00000009	CDS	44829039	44829226	+
GWHAAZE00000009	CDS	44829791	44830394	+
GWHAAZE00000009	CDS	44830513	44830584	+
GWHAAZE00000009	CDS	44830722	44830886	+
GWHAAZE00000009	CDS	44835681	44835806	+
GWHAAZE00000009	CDS	44836074	44836201	+
GWHAAZE00000009	CDS	44836991	44837147	+
GWHAAZE00000009	CDS	44842031	44842077	+
GWHAAZE00000009	CDS	44842148	44842211	+
GWHAAZE00000009	CDS	44842387	44842461	+
GWHAAZE00000009	CDS	44842557	44842676	+
GWHAAZE00000009	CDS	44843021	44843206	+
GWHAAZE00000009	CDS	44843755	44843876	+
GWHAAZE00000009	CDS	44843965	44844034	+
GWHAAZE00000009	CDS	44844189	44844320	+

Transcript Sequence
>GWHTAAZE030560 ATGATGCGAATACGGAGCATGCTTATGATGGTCTGCTGTGGACATTGCGGGGCTTTCTTCAGTTCTGCTACTTCCAGTTTCGGGAGCGGAGATATCAAAAAGGTCATCTTCCCCCCTAAACGAGTTTATATTCTTTTTGACGAGGATTACATTGATGTGGTTGTTGGAAAAAAATTGCAGTTGGACAAAGGTTGGCATACAATATGGAGCTGTCTAATGCGTGGTTTACCTACTTTCAGCACTATTACCTCAGTTGCAGATGCTGCCTTAGTGCTTCTTGGGAACATAATTTCAAGTGACCCGATGAATACTTTTGTCGTATCTCAAGATGTGTGGGACCTTCGTTTGTTTAAGAGTTTGCCATCAATGTCTCTTTTGTGCTTCATTTCGTGTTATTTCTCAAGGAGAGGATCCCAAGGTGATCTTCGGGACGTTTTACATCTCAGACAAAATCTCTTGAGAACAGTTTTGGCTTTTCTTAATTGGAAGGAACGCTTCATTTTCAATGAGCAAGTCGTTGTAATGCTGCCGGCAGCAGTTTCTGCTCTCTGTACTGGATTTCCTTCTTTCCCACATTGTGAGCGAGGAGCTTATTCATCATACTTCATTGTAGATGTTCCTGAAGTGGCAGATGACTGTGGGAAGGCAGATGAATGTGAGCCAGGAAATTTCCATGAACCCTTTGAGTGCTCCACTGATGTCCTTGCACAAATTGATCCATGTTCTAGGGCTGAGGTTCCCCAACCTCAAAGTTATCAAAATGTACATCTACCTCCGCAGTTAAGGGATCCGCTGCTTCACGAGATGGAAACCTGCATTCTTGAAGCCATACTGAATGAGGAGATTGAAAAGACTCATCTATCAGATGTCGTCTTTGTTTGTGCCCTCATATCAAATTTCATGTACATTTCTTACATTACAAGGCAAAGAGTTTCTTCATTCCTCTCTAAAACATGTCGGTACATGTTGGAATTGACTGATTGTGCTGCTTCTATTGTCGAAAAGTTCTCCGGTGATATTGCATGTGGTTTTTTTGCATCGAACTTCACTTTTGACTGCACGGACTCCATGGTAGCTTCTTTTAGAAGTTTTGTTGGCTCTCCTATTTTCAGTAAATGGAGAGATAACAATGTTATTGGCGATGTACCCTATACTGCAATTATTCAATCCATTGAGAGGCTTCTGAAGGCTCTGGCTAGACTGTATGAAGGATTTTCTGATTGCTCAAAGTTTCTTTCGTCAGAGAAAAAGTTGCCAGATTATTCTACTTCTGTGATTTCTGTTCAAGATTCTTACCCGTTGCATCACTGTAAAAGTATGATTGTAGACATGGACTTGGATTCGAGTGTTGGTGTTGAAGATGCCGATATTTTGACTATTAGTGGGAAAAGTTCTGGTGGCGTATCTGTTTCTTCAGTGAATCGGAAGCTGGACATTTTATCATTAATATCATGTTTTTTCTCAGTCTTACCAACCGTTACATGGGACATCTTGTTAAACATTATGAAGAAAGAAAGTGATCCAAGGGTGGTGGAAAATCTTCTCTTCAGTCTTTGTCAACACCTTCAGTTGTCCTCTTCCAGGAACTTTTCAGAATTGGTTATACTGATAAATGACATGGTTGATATTCGGACAAACCTTAAGCTCCACTGTTTTAATATACAAGCTGCCATGTGTCGTTTGTTGGAGACACTATTATCCTTAAACACGGTTGGTGATGATAACGATGGTAATCAATCTGTAAAGAAAATAGTATCTGAACAGAGCTTGAAGTCTCTTGGATATTTGGTGAACAAGGTTGCACAAAATGATTTACTTGGCTGGTTTGGCCGAATTAAGCTAATTGATTGCATATGCAATTTTATTCTACTTGAACCTCACATTGGTCAGACCATGATTGACAAGTTGCTTATGATGCTCCGAGATCCTGATTATCGAGTTAGACTCTCACTTGCAAAACGGATTGGTATTCTTTTTCAAACATGGGATGGTCATGATGACCTCTTCCAGGATATATGTTCAAGTTTCGGCGTGAAGTTGGTGGCGTCCTCAAAGGGAAAAATTGTTACTGCAAAGGAGGTTTTGGCCGCTGGTTCTCATCCTCGTCCACTGATGGAAACAATTATCATAACTCTAATGCATCTTGCACTGCACAGTGAGAAGCTTGAATTGGAGGCTGTTTTTATGATGTGTGTTGTTGCAGCAATTGATCCTTGTCAGAGGGAACTGGTCAGTCCAGTGCTTGATAATCTATCAAGAAAGTTACAGTACGCTACCAGATCAAAGTACATGGAGGAACTTATGGGACCAATTCTTTTCTTTTGGGTTGCTTGTGGTGTAAGCTTAGTTGCACTAGTTGAGACAAGGGATCTTTTTGTTTTCAACATGGAACCTAGTAATTTCGTGCAATACTGTTGCCATTGGCTTCTTCCAGCTTTGATTTTGCATGGGGACACGTCCAACTTGAACTGGGTTGCCAAGATTGCTTGTCAGTCTTCTGCAGCTTTGGTTAAAAATCACTTTGTGCCAATATTTTCGGTTTGTATGGCACTGCATTGCAGTAAGAAGTCTGGTTCAGAAAATGGAGCAGCGGTACTTCAGAGTTCAATTTTGAGCGTTGCCAAGATATCTGAGAATGAACGAGACATACTTATAAAGAAACATATGGTTTCTATTGTCAGCCACATTTTATCTCTTGCTGCTTGTGCATCAAATCCTGCACTCCCTTTCTTTTCCAGAGATACATTGGTCCAAGCTATTCAAACAGTTGTTGATGGATTCTTGGAAATGGAGCATTGTCCTAGGAGTGTTGGTGTTGTTGACAAGATCAACATTTTTCGTCCGGATAGAGTATTTATGTTTATCGTTGAAATCCATTACAAAGTTACGGCAGCTATTCATTATAGGCATAAGTGTAATCGGTTGGCTGCAATTGAAGTGCTCATTAACGTTCTTGGGCATAGAGCTGCAGTTTCTAGTACTTCCAAGTAA

Network for GWHGAAZE030526

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAZE030544
MMRIRSMLMMVCCGHCGAFFSSATSSFGSGDIKKVIFPPKRVYILFDEDYIDVVVGKKLQLDKGWHTIWSCLMRGLPTFSTITSVADAALVLLGNIISSDPMNTFVVSQDVWDLRLFKSLPSMSLLCFISCYFSRRGSQGDLRDVLHLRQNLLRTVLAFLNWKERFIFNEQVVVMLPAAVSALCTGFPSFPHCERGAYSSYFIVDVPEVADDCGKADECEPGNFHEPFECSTDVLAQIDPCSRAEVPQPQSYQNVHLPPQLRDPLLHEMETCILEAILNEEIEKTHLSDVVFVCALISNFMYISYITRQRVSSFLSKTCRYMLELTDCAASIVEKFSGDIACGFFASNFTFDCTDSMVASFRSFVGSPIFSKWRDNNVIGDVPYTAIIQSIERLLKALARLYEGFSDCSKFLSSEKKLPDYSTSVISVQDSYPLHHCKSMIVDMDLDSSVGVEDADILTISGKSSGGVSVSSVNRKLDILSLISCFFSVLPTVTWDILLNIMKKESDPRVVENLLFSLCQHLQLSSSRNFSELVILINDMVDIRTNLKLHCFNIQAAMCRLLETLLSLNTVGDDNDGNQSVKKIVSEQSLKSLGYLVNKVAQNDLLGWFGRIKLIDCICNFILLEPHIGQTMIDKLLMMLRDPDYRVRLSLAKRIGILFQTWDGHDDLFQDICSSFGVKLVASSKGKIVTAKEVLAAGSHPRPLMETIIITLMHLALHSEKLELEAVFMMCVVAAIDPCQRELVSPVLDNLSRKLQYATRSKYMEELMGPILFFWVACGVSLVALVETRDLFVFNMEPSNFVQYCCHWLLPALILHGDTSNLNWVAKIACQSSAALVKNHFVPIFSVCMALHCSKKSGSENGAAVLQSSILSVAKISENERDILIKKHMVSIVSHILSLAACASNPALPFFSRDTLVQAIQTVVDGFLEMEHCPRSVGVVDKINIFRPDRVFMFIVEIHYKVTAAIHYRHKCNRLAAIEVLINVLGHRAAVSSTSK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04728	ATM, TEL1	Homologous recombination	map03440
		NF-kappa B signaling pathway	map04064
		FoxO signaling pathway	map04068
		Cell cycle	map04110
		Apoptosis	map04210
		Apoptosis - fly	map04214
		p53 signaling pathway	map04115
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.247
	SRR3591706	second leaf	3.357
	SRR3591707	mature leaf	1.634
	SRR3591708	Shoot apex	4.008
	SRR3591709	Stem	2.957
	SRR3591710	White floral bud	1.278
	SRR3591711	White flower	1.434
	SRR3591712	Green floral bud	2.236
	SRR3591713	Yellow flower	0.305
SRP173429	SRR8316895	Juvenile bud stage	2.601
	SRR8316896	Juvenile bud stage	3.424
	SRR8316897	Juvenile bud stage	1.542
	SRR8316894	Third green stage	1.671
	SRR8316900	Third green stage	3.858
	SRR8316901	Third green stage	2.705
	SRR8316898	Complete white stage	0.063
	SRR8316899	Complete white stage	1.972
	SRR8316903	Complete white stage	0.600
	SRR8316902	Silver flowering stage	0.036
	SRR8316904	Silver flowering stage	0.124
	SRR8316905	Silver flowering stage	0.068
	SRR8316906	Gold flowering stage	0.052
	SRR8316907	Gold flowering stage	0.075
	SRR8316908	Gold flowering stage	0.149
SRP132670	SRR6706286	Control	1.715
	SRR6706287	Light intensity 50%	1.938
	SRR6706288	Light intensity 20%	2.392
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.644
	CNS0095593	Slightly white alabastrum(diploid) 2	1.208
	CNS0095594	Slightly white alabastrum(diploid) 3	0.609
	CNS0095595	Whole white alabastrum(diploid) 2	0.672
	CNS0095596	Whole white alabastrum(diploid) 3	0.769
	CNS0095597	Whole white alabastrum(diploid) 4	0.871
	CNS0095598	Silvery flower (diploied) 1	0.938
	CNS0095599	Silvery flower (diploied) 2	1.295
	CNS0095600	Silvery flower (diploied) 3	1.182
	CNS0095601	Golden flower (diploid) 1	0.592
	CNS0095602	Golden flower (diploid) 2	1.152
	CNS0095603	Golden flower (diploid) 3	1.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.332
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.674
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.877
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.899
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.558
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.096
	CNS0095610	Silvery flower (tetraploid) 1	0.784
	CNS0095611	Silvery flower (tetraploid) 2	0.977
	CNS0095612	Silvery flower (tetraploid) 3	0.519
	CNS0095613	Golden flower (tetraploid) 1	0.098
	CNS0095614	Golden flower (tetraploid) 2	0.305
	CNS0095615	Golden flower (tetraploid) 3	0.111
CRA001975	CRR073297	Stem 1	2.710
	CRR073298	Stem 2	2.438
	CRR073299	Stem 3	1.123
	CRR073300	Leaf 1	2.167
	CRR073301	Leaf 2	1.728
	CRR073302	Leaf 3	0.913
	CRR073303	Juvenile bud 1	0.966
	CRR073304	Juvenile bud 2	0.886
	CRR073305	Juvenile bud 3	1.467
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.001
	CRR073308	Third green 3	0.022
	CRR073309	Second white 1	0.027
	CRR073310	Second white 2	0.145
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.020
	CRR073315	Gold flowering 1	0.311
	CRR073316	Gold flowering 2	0.167
	CRR073317	Gold flowering 3	0.085
	CRR073318	Tawny withering 1	0.332
	CRR073319	Tawny withering 2	0.051
	CRR073320	Tawny withering 3	0.926