Gene detail

Detail information of GWHGAAZE030501

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12759.1	0	unnamed protein product [Coffea canephora]
COG	YP_001737382.1	0.000002	aspartate/tyrosine/aromatic aminotransferase
Swissprot	tr\|Q94A02\|TAR2_ARATH	5E-169	Tryptophan aminotransferase-related protein 2
trEMBL	tr\|A0A068UWZ4\|A0A068UWZ4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_70 {ECO:0000313\|EMBL:CDP12759.1}
TAIR10	AT4G24670.2	1E-136	tryptophan aminotransferase related 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44476564	44478159	-
GWHAAZE00000009	mRNA	44476564	44478159	-
GWHAAZE00000009	exon	44477869	44478159	-
GWHAAZE00000009	exon	44477486	44477766	-
GWHAAZE00000009	exon	44477104	44477408	-
GWHAAZE00000009	exon	44476564	44477009	-
GWHAAZE00000009	CDS	44477869	44478159	-
GWHAAZE00000009	CDS	44477486	44477766	-
GWHAAZE00000009	CDS	44477104	44477408	-
GWHAAZE00000009	CDS	44476825	44477009	-
GWHAAZE00000009	three_prime_UTR	44476564	44476824	-

Transcript Sequence
>GWHTAAZE030535 ATGTATGAGAGGTTTTGGAAGCAGATGGGGGACAAGACGACAGTTGTGATCCCCGGTTGGCAATACATAAGCTATTTCTCCGACATGAGAAACCTCTGTTGGTTTTTGGAGCCAGAATTTGCAAAAGCTGTCATTAGGTTACACAATGTGGTTGGAAATGCCGTTACTCAAGATTGTCACATTGTGGTCGGAACTGGTTCCACTCAACTCTTTCAGGCCGTACTTTATGCACTCTCTCCATCCGATGCGTCTGAGCCCATGAGTGTTGTATCTGCTGCCCCGTTCTATTCATCGTATCCGTTGATTACGGACTTCCTAAAGTCGGGGCTATATAAATGGGCTGGTGATGCATACAAATTCAGTAAAGATAGGCCTTACATCGAGCTTGTGACATCACCTAATAATCCCGATGGATCGACAAGGCAAGCAGTGGTTAATCGAAACGAAGGAATATTGGTACATGACCTTGCTTACTACTGGCCACAGTATACTCCCATTGCGTTTCCAGCAGATCATGACATCATGCTCTTCACAGTTTCCAAAAGCACGGGCCATGCTGGGACCCGTATTGGTTGGGCTCTTGTTAAAGATGAAGGGATTGCAAAGAAAATGACCAAGTACATAGAGCTCAACACTATTGGCGTGTCTAAAGATTCACAGATCCGTGCGGCAAAGATTTTGCAGGCTGTGTCAGATAACAATGGCCGTGTTGGGAATCCTAGGGAAAGTGAAACATTTTTCGAATATGGTTATAACCTAATGGCTAAGAGGTGGAAGCAACTTAGAGAGGCTGTGAATAAGAGTGGACTATTCAGTTTACCCGAATTTCCTCCTGGGATGTGCACATTCAGCGGTCGTGCTTTTGAACCTCAACCTGCTTTTGCGTGGTTGAAATGTGAAAGTGAATTGGAGGACTGTGAAAGCTTCCTTCGAAGCCACAAAATATTGACTAGAGGTGGGAAACACTTTGGGGTTAGCCCCAAGTATGTGAGGATAAGCATGTTGGATCGCAATGAAAAGTTTAATCTCTTTGCAGAGAGATTGTCTAGAATTCACTCTTAGAAGTACACCTCCGTTATGTACGAGGGGGAAGATATTGGGGGATGACCCCGTGCTTATGTAAACAAAAAACAATTTCGTTTTATCTTTTGTGATATTTCTGTAAGCTGTTGTGATCGTGATTTGATTGATCAAGTAGTGCATAGGACCTAGTACTTATCCAATCAAGTTATGATGCCAAATCAGTCCATGGGGTAACTTTTTTGTGAAGGATTTTGCGTGTAGTACTTTTAGTTATATATTTTGAGAGCATTTATGATTTCC

Network for GWHGAAZE030501

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04864.14	Alliinase_C	1	351	6.00E-148

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16903	TAA1	Metabolic pathways	map01100
K16903	TAA1	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0016846	molecular_function	carbon-sulfur lyase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.947
	SRR3591706	second leaf	21.007
	SRR3591707	mature leaf	9.760
	SRR3591708	Shoot apex	30.609
	SRR3591709	Stem	3.537
	SRR3591710	White floral bud	5.536
	SRR3591711	White flower	1.347
	SRR3591712	Green floral bud	26.237
	SRR3591713	Yellow flower	0.565
SRP173429	SRR8316895	Juvenile bud stage	10.343
	SRR8316896	Juvenile bud stage	17.076
	SRR8316897	Juvenile bud stage	6.074
	SRR8316894	Third green stage	10.349
	SRR8316900	Third green stage	35.952
	SRR8316901	Third green stage	40.011
	SRR8316898	Complete white stage	2.570
	SRR8316899	Complete white stage	28.962
	SRR8316903	Complete white stage	4.489
	SRR8316902	Silver flowering stage	0.324
	SRR8316904	Silver flowering stage	0.966
	SRR8316905	Silver flowering stage	0.342
	SRR8316906	Gold flowering stage	2.143
	SRR8316907	Gold flowering stage	1.154
	SRR8316908	Gold flowering stage	1.213
SRP132670	SRR6706286	Control	18.270
	SRR6706287	Light intensity 50%	19.363
	SRR6706288	Light intensity 20%	22.383
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.686
	CNS0095593	Slightly white alabastrum(diploid) 2	28.274
	CNS0095594	Slightly white alabastrum(diploid) 3	11.477
	CNS0095595	Whole white alabastrum(diploid) 2	23.405
	CNS0095596	Whole white alabastrum(diploid) 3	27.432
	CNS0095597	Whole white alabastrum(diploid) 4	20.124
	CNS0095598	Silvery flower (diploied) 1	3.021
	CNS0095599	Silvery flower (diploied) 2	2.965
	CNS0095600	Silvery flower (diploied) 3	1.800
	CNS0095601	Golden flower (diploid) 1	1.098
	CNS0095602	Golden flower (diploid) 2	2.147
	CNS0095603	Golden flower (diploid) 3	2.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.654
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.112
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.025
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.810
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.216
	CNS0095610	Silvery flower (tetraploid) 1	4.786
	CNS0095611	Silvery flower (tetraploid) 2	1.832
	CNS0095612	Silvery flower (tetraploid) 3	4.612
	CNS0095613	Golden flower (tetraploid) 1	2.359
	CNS0095614	Golden flower (tetraploid) 2	7.969
	CNS0095615	Golden flower (tetraploid) 3	0.632
CRA001975	CRR073297	Stem 1	36.533
	CRR073298	Stem 2	43.699
	CRR073299	Stem 3	46.528
	CRR073300	Leaf 1	70.375
	CRR073301	Leaf 2	56.052
	CRR073302	Leaf 3	58.846
	CRR073303	Juvenile bud 1	71.108
	CRR073304	Juvenile bud 2	78.604
	CRR073305	Juvenile bud 3	58.117
	CRR073306	Third green 1	10.454
	CRR073307	Third green 2	13.187
	CRR073308	Third green 3	11.868
	CRR073309	Second white 1	3.086
	CRR073310	Second white 2	3.706
	CRR073311	Second white 3	1.292
	CRR073312	Silver flowering 1	0.909
	CRR073313	Silver flowering 2	0.242
	CRR073314	Silver flowering 3	0.067
	CRR073315	Gold flowering 1	4.587
	CRR073316	Gold flowering 2	4.856
	CRR073317	Gold flowering 3	5.669
	CRR073318	Tawny withering 1	6.714
	CRR073319	Tawny withering 2	5.976
	CRR073320	Tawny withering 3	7.378