Gene detail

Detail information of GWHGAAZE030492

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AIS23647.1	0	amine oxidase 4 [Malus domestica]
COG	YP_007125935.1	2E-175	Copper amine oxidase domain-containing protein
Swissprot	tr\|Q43077\|AMO_PEA	5E-56	Primary amine oxidase (Precursor)
trEMBL	tr\|A0A096ZNR3\|A0A096ZNR3_MALDO	0	Amine oxidase 4 {ECO:0000313\|EMBL:AIS23647.1}
TAIR10	AT2G42490.1	0	Copper amine oxidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44385046	44392437	+
GWHAAZE00000009	mRNA	44385046	44392437	+
GWHAAZE00000009	exon	44385046	44385286	+
GWHAAZE00000009	exon	44387264	44387373	+
GWHAAZE00000009	exon	44387468	44387773	+
GWHAAZE00000009	exon	44388536	44388648	+
GWHAAZE00000009	exon	44388749	44389079	+
GWHAAZE00000009	exon	44389172	44389387	+
GWHAAZE00000009	exon	44389497	44389580	+
GWHAAZE00000009	exon	44390301	44390486	+
GWHAAZE00000009	exon	44390742	44390882	+
GWHAAZE00000009	exon	44391006	44391274	+
GWHAAZE00000009	exon	44391435	44391516	+
GWHAAZE00000009	exon	44392300	44392437	+
GWHAAZE00000009	CDS	44385046	44385286	+
GWHAAZE00000009	CDS	44387264	44387373	+
GWHAAZE00000009	CDS	44387468	44387773	+
GWHAAZE00000009	CDS	44388536	44388648	+
GWHAAZE00000009	CDS	44388749	44389079	+
GWHAAZE00000009	CDS	44389172	44389387	+
GWHAAZE00000009	CDS	44389497	44389580	+
GWHAAZE00000009	CDS	44390301	44390486	+
GWHAAZE00000009	CDS	44390742	44390882	+
GWHAAZE00000009	CDS	44391006	44391274	+
GWHAAZE00000009	CDS	44391435	44391516	+
GWHAAZE00000009	CDS	44392300	44392437	+

Transcript Sequence
>GWHTAAZE030526 ATGGCCTCAACTCCGGAAAAGGCGACGCATCATTCTTCTTGTTTCGTTTCCAGCCAATCTGCTCCCCTCCGTCGCCAAGTTGCTTCCGCCGCAGTCTCTCCGGCCACAGCAGCTGCTGAGGTGGCGGTGCAGGCTTGGAGCGGCGTCTCTTCCTCTGAACGGCGCGACGATCAGTCTATTAAGAAAGCTGCCATGGCTTCCTTGATCCGTCCCCAACCTTCCACGAATGCCTCCGCCAAAGGGATTCCCATCATGCTAAGGGCTCAAAGCAGCCATCCTTTGGACCCTTTATCTGCTGCTGAGATCTCAGTGGCTGTAGCAACTGTCAGGGCAGCTGGAGCCACCCCTGAGGTCAGAGATGGCATGCGATTTGTTGAAGTGGTTCTGTTAGAGCCAGATAAAAATGTTGTTGCCTTGGCTGATGCATATTTTTTCCCTCCATTCCAACCATCATTATTACCCAGAATCAAAGGTGGAGCCGTTATTCCTAGTAAACTTCCTCCAAGGAGAGCTAGACTTATTGTCTACAATAAAAAATCAAACGAGACAAGCATATGGATTGTCGAGCTATCGGAAGTGCATGCTGCAACTCGAGGTGGACATCACAGGGGAAAAGTCATTTCATCACAAATTATTCGAGATGTTCAGCCTCCTATGGATGCTATGGAATATGCTGAATGTGAAGCAGTTGTGAAAGATTATCCTCCATTTCGGGAGGCCATGAAGAAGAGGGGTATTGAGGATATGGATCTTGTAATGGTTGATGCTTGGTGTGTTGGTTATCACAGTGAAGCTGATGCTCCTAGCCGCAGATTAGCCCAACCACTTATATTCTGTAGAACAGAAAGTGACTGCCCGATGGAAAACGGTTATGCACGTCCAGTTGCGGGCATTTATGTGCTTGTTGATATGCAAAATATGGTGGTCATTGAATTTGAGGACCGTAAACTTGTTCCCTTACCTCCAGCTGATCCCTTGAGGAATTACACTCCTGGTGAAACAAGAGGTGGGGTTGATCGAAGCGATGTTAAGCCCTTGCAAATTGTTCAACCTGAGGGTCCAAGCTTCCGTGTTAATGGGCACTATGTAGAGTGGCAGAAGTGGAATTTTCGAATTGGTTTCACTCCCAGGGAGGGTTTGGTTATACATTCTGTTGCATATGTTGATGGTAGTCGAGGTCGAAGACCCATAGCCCATAGGTTGAGTTTTGTGGAGATGGTTGTCCCTTACGGTGATCCAAACGCTCCACATTACAGGAAGAATGCATTTGATGCAGGTGAAGATGGTCTTGGGAAAAATGCTCATTCTCTTAAGAAGGGATGTGATTGTTTGGGATATATCAAGTACTTTGATGCCCATTTTACTAATTTTACTGGAGGCGTTGACACAATTGAAAATTGTGATGGAAAAATAGAGGCTGAAGTTAAACTCACTGGAATTCTTAGTCTAGGAGCATTGCAACCCGGAGAATCTCGAAGATATGGTACAACAATTGCACCAGGCTTGTATGCACCAGTTCATCAACATTTTTTTGTTGCCCGCATGGATATGGCCGTTGATTGCAAGCCTGGAGAACCATACAATCAGGTTGTTGAGGTTGATGTTAAAGTTGAAGAACCTGGAAAGAATAATGTCCACAACAATGCATTCTACACTGAAGAAACATTGCTTAGAACTGAATCCCAAGCAATGCGTGACTTCAATCCTTTGTCTGCTCGCCATTGGATTGTTAGAAACACAAGAACTGTCAACAGGACTGGACAACTTACTGGCTACAAGTTGGTACCTGGTTCAAACTGTTTGCCACTAGCTGGTTCTGAGGCCAAGTTTTTGCGAAGAGCTGCATTTTTAAAACATAATCTCTGGGTTACACCATATGCCCGGGACGAAACATTTCCTGGGGGAGAGTTTCCTAACCAGAATCCACGTGTTGGCGAAGGTTTGGCTTCATGGGTTAAGCAAAATCGATCTCTGGAGGAAACTGATATTGTTCTTTGGTACGTGTTTGGGATCACACATGTTCCGCGGTTGGAAGATTGGCCCGTTATGCCAGTAGAGCACATTGGTTTTATGCTTCAGCCACACGGGTTCTTCAACTGCTCACCTGCAGTAGACGTCCCACCTGGTGCATGCGAGTTGGATGTCAAAGACGCTGATGTTAAAGACAGTGGTGGAGTGGTCAAGCCAATTCCAAATGGATTGATGGCCAAGCTTTAA

Network for GWHGAAZE030492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02727.17	Cu_amine_oxidN2	92	137	0.00014
PF02728.17	Cu_amine_oxidN3	217	320	1.50E-29
PF01179.21	Cu_amine_oxid	346	466	1.20E-44
PF01179.21	Cu_amine_oxid	467	708	3.90E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00276	AOC3, AOC2, tynA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycine, serine and threonine metabolism	map00260
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		beta-Alanine metabolism	map00410
		Isoquinoline alkaloid biosynthesis	map00950
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0009308	biological_process	amine metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0008131	molecular_function	primary amine oxidase activity
GO:0048038	molecular_function	quinone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.950
	SRR3591706	second leaf	20.893
	SRR3591707	mature leaf	13.057
	SRR3591708	Shoot apex	30.423
	SRR3591709	Stem	40.034
	SRR3591710	White floral bud	49.561
	SRR3591711	White flower	43.020
	SRR3591712	Green floral bud	45.907
	SRR3591713	Yellow flower	38.786
SRP173429	SRR8316895	Juvenile bud stage	36.502
	SRR8316896	Juvenile bud stage	35.390
	SRR8316897	Juvenile bud stage	14.688
	SRR8316894	Third green stage	15.107
	SRR8316900	Third green stage	39.308
	SRR8316901	Third green stage	37.749
	SRR8316898	Complete white stage	21.154
	SRR8316899	Complete white stage	47.394
	SRR8316903	Complete white stage	38.722
	SRR8316902	Silver flowering stage	11.835
	SRR8316904	Silver flowering stage	17.912
	SRR8316905	Silver flowering stage	9.070
	SRR8316906	Gold flowering stage	21.219
	SRR8316907	Gold flowering stage	21.288
	SRR8316908	Gold flowering stage	21.731
SRP132670	SRR6706286	Control	48.062
	SRR6706287	Light intensity 50%	50.976
	SRR6706288	Light intensity 20%	53.123
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.123
	CNS0095593	Slightly white alabastrum(diploid) 2	25.226
	CNS0095594	Slightly white alabastrum(diploid) 3	24.960
	CNS0095595	Whole white alabastrum(diploid) 2	23.323
	CNS0095596	Whole white alabastrum(diploid) 3	26.108
	CNS0095597	Whole white alabastrum(diploid) 4	25.977
	CNS0095598	Silvery flower (diploied) 1	24.358
	CNS0095599	Silvery flower (diploied) 2	22.506
	CNS0095600	Silvery flower (diploied) 3	41.263
	CNS0095601	Golden flower (diploid) 1	20.670
	CNS0095602	Golden flower (diploid) 2	28.785
	CNS0095603	Golden flower (diploid) 3	30.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.507
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.393
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.732
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.321
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.749
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.768
	CNS0095610	Silvery flower (tetraploid) 1	49.717
	CNS0095611	Silvery flower (tetraploid) 2	36.812
	CNS0095612	Silvery flower (tetraploid) 3	49.143
	CNS0095613	Golden flower (tetraploid) 1	15.720
	CNS0095614	Golden flower (tetraploid) 2	27.241
	CNS0095615	Golden flower (tetraploid) 3	35.558
CRA001975	CRR073297	Stem 1	55.867
	CRR073298	Stem 2	34.796
	CRR073299	Stem 3	31.057
	CRR073300	Leaf 1	37.923
	CRR073301	Leaf 2	31.848
	CRR073302	Leaf 3	28.748
	CRR073303	Juvenile bud 1	32.471
	CRR073304	Juvenile bud 2	22.859
	CRR073305	Juvenile bud 3	38.632
	CRR073306	Third green 1	37.523
	CRR073307	Third green 2	31.297
	CRR073308	Third green 3	37.699
	CRR073309	Second white 1	13.654
	CRR073310	Second white 2	20.222
	CRR073311	Second white 3	17.765
	CRR073312	Silver flowering 1	21.281
	CRR073313	Silver flowering 2	25.428
	CRR073314	Silver flowering 3	15.368
	CRR073315	Gold flowering 1	5.365
	CRR073316	Gold flowering 2	11.500
	CRR073317	Gold flowering 3	3.753
	CRR073318	Tawny withering 1	26.705
	CRR073319	Tawny withering 2	20.118
	CRR073320	Tawny withering 3	30.133