Detail information of GWHGAAZE030407


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98474.10unnamed protein product [Coffea canephora]
COGYP_008432810.18E-10hypothetical protein N186_07295
Swissprottr|Q8LPF0|TAF2_ARATH9E-153Transcription initiation factor TFIID subunit 2
trEMBLtr|A0A068TR94|A0A068TR94_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO98474.1}
TAIR10AT1G73960.22E-132TBP-associated factor 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4320881243215041-
GWHAAZE00000009mRNA4320881243215041-
GWHAAZE00000009exon4320881243208907-
GWHAAZE00000009exon4321048643210639-
GWHAAZE00000009exon4321081243211011-
GWHAAZE00000009exon4321355343213619-
GWHAAZE00000009exon4321370343213848-
GWHAAZE00000009exon4321405143214384-
GWHAAZE00000009exon4321488543215041-
GWHAAZE00000009five_prime_UTR4321500143215041-
GWHAAZE00000009CDS4321488543215000-
GWHAAZE00000009CDS4321405143214384-
GWHAAZE00000009CDS4321370343213848-
GWHAAZE00000009CDS4321355343213619-
GWHAAZE00000009CDS4321081243211011-
GWHAAZE00000009CDS4321048643210639-
GWHAAZE00000009CDS4320881243208907-
Transcript Sequence

Network for GWHGAAZE030407

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03128TAF2 Basal transcription factors map03022

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.222
SRR3591706second leaf10.559
SRR3591707mature leaf10.718
SRR3591708Shoot apex11.652
SRR3591709Stem17.131
SRR3591710White floral bud10.772
SRR3591711White flower17.724
SRR3591712Green floral bud8.058
SRR3591713Yellow flower15.024
SRP173429 SRR8316895Juvenile bud stage 4.723
SRR8316896Juvenile bud stage 5.189
SRR8316897Juvenile bud stage 3.913
SRR8316894Third green stage 3.542
SRR8316900Third green stage 5.641
SRR8316901Third green stage 5.229
SRR8316898Complete white stage 1.925
SRR8316899Complete white stage 7.546
SRR8316903Complete white stage 7.381
SRR8316902Silver flowering stage4.522
SRR8316904Silver flowering stage8.044
SRR8316905Silver flowering stage3.307
SRR8316906Gold flowering stage 9.330
SRR8316907Gold flowering stage 6.268
SRR8316908Gold flowering stage 6.565
SRP132670SRR6706286Control9.884
SRR6706287Light intensity 50%9.271
SRR6706288Light intensity 20%9.394
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.188
CNS0095593Slightly white alabastrum(diploid) 21.757
CNS0095594Slightly white alabastrum(diploid) 31.610
CNS0095595Whole white alabastrum(diploid) 22.009
CNS0095596Whole white alabastrum(diploid) 31.013
CNS0095597Whole white alabastrum(diploid) 41.913
CNS0095598Silvery flower (diploied) 15.420
CNS0095599Silvery flower (diploied) 23.875
CNS0095600Silvery flower (diploied) 311.372
CNS0095601Golden flower (diploid) 14.705
CNS0095602Golden flower (diploid) 29.934
CNS0095603Golden flower (diploid) 312.010
CNS0095604Slightly white alabastrum(tetraploid) 12.576
CNS0095605Slightly white alabastrum(tetraploid) 21.385
CNS0095606Slightly white alabastrum(tetraploid) 37.657
CNS0095607Whole white alabastrum(tetraploid) 11.854
CNS0095608Whole white alabastrum(tetraploid) 21.396
CNS0095609Whole white alabastrum(tetraploid) 35.252
CNS0095610Silvery flower (tetraploid) 18.967
CNS0095611Silvery flower (tetraploid) 29.215
CNS0095612Silvery flower (tetraploid) 37.261
CNS0095613Golden flower (tetraploid) 14.521
CNS0095614Golden flower (tetraploid) 25.673
CNS0095615Golden flower (tetraploid) 38.252
CRA001975CRR073297Stem 18.340
CRR073298Stem 26.726
CRR073299Stem 33.723
CRR073300Leaf 17.459
CRR073301Leaf 24.065
CRR073302Leaf 34.518
CRR073303Juvenile bud 13.062
CRR073304Juvenile bud 22.600
CRR073305Juvenile bud 35.550
CRR073306Third green 12.186
CRR073307Third green 20.998
CRR073308Third green 32.444
CRR073309Second white 11.834
CRR073310Second white 22.096
CRR073311Second white 33.002
CRR073312Silver flowering 13.415
CRR073313Silver flowering 22.753
CRR073314Silver flowering 32.704
CRR073315Gold flowering 10.518
CRR073316Gold flowering 25.799
CRR073317Gold flowering 32.168
CRR073318Tawny withering 12.670
CRR073319Tawny withering 22.417
CRR073320Tawny withering 31.830