Detail information of GWHGAAZE030406


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98474.10unnamed protein product [Coffea canephora]
Swissprottr|Q8LPF0|TAF2_ARATH0Transcription initiation factor TFIID subunit 2
trEMBLtr|A0A068TR94|A0A068TR94_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO98474.1}
TAIR10AT1G73960.10TBP-associated factor 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4319445743207829-
GWHAAZE00000009mRNA4319445743207829-
GWHAAZE00000009exon4319445743194719-
GWHAAZE00000009exon4319497843195927-
GWHAAZE00000009exon4319879243198975-
GWHAAZE00000009exon4319905043199215-
GWHAAZE00000009exon4319930743199397-
GWHAAZE00000009exon4319947943199537-
GWHAAZE00000009exon4320057843200667-
GWHAAZE00000009exon4320093243201018-
GWHAAZE00000009exon4320183443201876-
GWHAAZE00000009exon4320196643202045-
GWHAAZE00000009exon4320255043202606-
GWHAAZE00000009exon4320278543202910-
GWHAAZE00000009exon4320464543204732-
GWHAAZE00000009exon4320483843205179-
GWHAAZE00000009exon4320529043205387-
GWHAAZE00000009exon4320735143207419-
GWHAAZE00000009exon4320779143207829-
GWHAAZE00000009CDS4320779143207829-
GWHAAZE00000009CDS4320735143207419-
GWHAAZE00000009CDS4320529043205387-
GWHAAZE00000009CDS4320483843205179-
GWHAAZE00000009CDS4320464543204732-
GWHAAZE00000009CDS4320278543202910-
GWHAAZE00000009CDS4320255043202606-
GWHAAZE00000009CDS4320196643202045-
GWHAAZE00000009CDS4320183443201876-
GWHAAZE00000009CDS4320093243201018-
GWHAAZE00000009CDS4320057843200667-
GWHAAZE00000009CDS4319947943199537-
GWHAAZE00000009CDS4319930743199397-
GWHAAZE00000009CDS4319905043199215-
GWHAAZE00000009CDS4319879243198975-
GWHAAZE00000009CDS4319497843195927-
GWHAAZE00000009CDS4319445743194719-
Transcript Sequence

Network for GWHGAAZE030406

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03128TAF2 Basal transcription factors map03022

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.892
SRR3591706second leaf21.926
SRR3591707mature leaf24.669
SRR3591708Shoot apex31.544
SRR3591709Stem43.523
SRR3591710White floral bud28.624
SRR3591711White flower37.107
SRR3591712Green floral bud22.153
SRR3591713Yellow flower37.756
SRP173429 SRR8316895Juvenile bud stage 14.351
SRR8316896Juvenile bud stage 18.085
SRR8316897Juvenile bud stage 8.890
SRR8316894Third green stage 8.476
SRR8316900Third green stage 16.388
SRR8316901Third green stage 16.660
SRR8316898Complete white stage 5.673
SRR8316899Complete white stage 19.987
SRR8316903Complete white stage 16.681
SRR8316902Silver flowering stage12.044
SRR8316904Silver flowering stage14.926
SRR8316905Silver flowering stage6.203
SRR8316906Gold flowering stage 16.374
SRR8316907Gold flowering stage 20.302
SRR8316908Gold flowering stage 19.505
SRP132670SRR6706286Control19.024
SRR6706287Light intensity 50%17.992
SRR6706288Light intensity 20%19.429
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.301
CNS0095593Slightly white alabastrum(diploid) 216.736
CNS0095594Slightly white alabastrum(diploid) 318.993
CNS0095595Whole white alabastrum(diploid) 210.847
CNS0095596Whole white alabastrum(diploid) 38.136
CNS0095597Whole white alabastrum(diploid) 410.786
CNS0095598Silvery flower (diploied) 119.215
CNS0095599Silvery flower (diploied) 216.481
CNS0095600Silvery flower (diploied) 318.579
CNS0095601Golden flower (diploid) 119.082
CNS0095602Golden flower (diploid) 219.051
CNS0095603Golden flower (diploid) 318.381
CNS0095604Slightly white alabastrum(tetraploid) 113.184
CNS0095605Slightly white alabastrum(tetraploid) 211.187
CNS0095606Slightly white alabastrum(tetraploid) 324.163
CNS0095607Whole white alabastrum(tetraploid) 19.899
CNS0095608Whole white alabastrum(tetraploid) 27.252
CNS0095609Whole white alabastrum(tetraploid) 310.815
CNS0095610Silvery flower (tetraploid) 118.110
CNS0095611Silvery flower (tetraploid) 214.029
CNS0095612Silvery flower (tetraploid) 315.518
CNS0095613Golden flower (tetraploid) 118.462
CNS0095614Golden flower (tetraploid) 218.455
CNS0095615Golden flower (tetraploid) 311.858
CRA001975CRR073297Stem 125.839
CRR073298Stem 220.702
CRR073299Stem 310.849
CRR073300Leaf 119.892
CRR073301Leaf 219.464
CRR073302Leaf 310.206
CRR073303Juvenile bud 19.804
CRR073304Juvenile bud 26.225
CRR073305Juvenile bud 314.509
CRR073306Third green 15.834
CRR073307Third green 24.181
CRR073308Third green 35.936
CRR073309Second white 12.190
CRR073310Second white 26.426
CRR073311Second white 36.619
CRR073312Silver flowering 15.337
CRR073313Silver flowering 26.284
CRR073314Silver flowering 35.271
CRR073315Gold flowering 16.910
CRR073316Gold flowering 212.414
CRR073317Gold flowering 33.453
CRR073318Tawny withering 117.371
CRR073319Tawny withering 217.422
CRR073320Tawny withering 313.909