Detail information of GWHGAAZE030398


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98460.16.16305E-76unnamed protein product [Coffea canephora]
COGYP_007156835.13E-27ATP-dependent Clp protease adapter protein clpS
trEMBLtr|A0A068TQ60|A0A068TQ60_COFCA2E-76Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO98460.1}
TAIR10AT1G68660.13E-57Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4289352542894331-
GWHAAZE00000009mRNA4289352542894331-
GWHAAZE00000009exon4289352542893810-
GWHAAZE00000009exon4289404542894192-
GWHAAZE00000009exon4289428942894331-
GWHAAZE00000009CDS4289428942894331-
GWHAAZE00000009CDS4289404542894192-
GWHAAZE00000009CDS4289352542893810-
Transcript Sequence

Network for GWHGAAZE030398

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02617.18ClpS781441.40E-18
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyN-domain

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0030163biological_processprotein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf63.944
SRR3591706second leaf154.312
SRR3591707mature leaf424.511
SRR3591708Shoot apex89.616
SRR3591709Stem116.719
SRR3591710White floral bud83.430
SRR3591711White flower87.761
SRR3591712Green floral bud86.858
SRR3591713Yellow flower80.144
SRP173429 SRR8316895Juvenile bud stage 60.826
SRR8316896Juvenile bud stage 87.030
SRR8316897Juvenile bud stage 41.109
SRR8316894Third green stage 29.694
SRR8316900Third green stage 99.532
SRR8316901Third green stage 95.771
SRR8316898Complete white stage 36.375
SRR8316899Complete white stage 136.796
SRR8316903Complete white stage 45.082
SRR8316902Silver flowering stage27.441
SRR8316904Silver flowering stage27.342
SRR8316905Silver flowering stage18.131
SRR8316906Gold flowering stage 67.364
SRR8316907Gold flowering stage 61.146
SRR8316908Gold flowering stage 73.555
SRP132670SRR6706286Control149.223
SRR6706287Light intensity 50%148.024
SRR6706288Light intensity 20%154.278
CNP0000432CNS0095592Slightly white alabastrum(diploid) 198.814
CNS0095593Slightly white alabastrum(diploid) 284.943
CNS0095594Slightly white alabastrum(diploid) 387.549
CNS0095595Whole white alabastrum(diploid) 292.678
CNS0095596Whole white alabastrum(diploid) 386.643
CNS0095597Whole white alabastrum(diploid) 486.367
CNS0095598Silvery flower (diploied) 1155.122
CNS0095599Silvery flower (diploied) 2126.621
CNS0095600Silvery flower (diploied) 3130.152
CNS0095601Golden flower (diploid) 1176.594
CNS0095602Golden flower (diploid) 2154.058
CNS0095603Golden flower (diploid) 3152.464
CNS0095604Slightly white alabastrum(tetraploid) 1116.765
CNS0095605Slightly white alabastrum(tetraploid) 2115.783
CNS0095606Slightly white alabastrum(tetraploid) 3180.751
CNS0095607Whole white alabastrum(tetraploid) 1102.410
CNS0095608Whole white alabastrum(tetraploid) 291.613
CNS0095609Whole white alabastrum(tetraploid) 3152.373
CNS0095610Silvery flower (tetraploid) 1217.358
CNS0095611Silvery flower (tetraploid) 2252.116
CNS0095612Silvery flower (tetraploid) 3155.035
CNS0095613Golden flower (tetraploid) 1190.685
CNS0095614Golden flower (tetraploid) 2203.473
CNS0095615Golden flower (tetraploid) 370.366
CRA001975CRR073297Stem 193.388
CRR073298Stem 278.147
CRR073299Stem 3101.396
CRR073300Leaf 176.117
CRR073301Leaf 268.869
CRR073302Leaf 374.894
CRR073303Juvenile bud 172.568
CRR073304Juvenile bud 260.456
CRR073305Juvenile bud 349.010
CRR073306Third green 116.573
CRR073307Third green 220.786
CRR073308Third green 315.288
CRR073309Second white 131.496
CRR073310Second white 232.711
CRR073311Second white 321.003
CRR073312Silver flowering 113.796
CRR073313Silver flowering 211.482
CRR073314Silver flowering 39.186
CRR073315Gold flowering 1577.556
CRR073316Gold flowering 2528.390
CRR073317Gold flowering 3481.143
CRR073318Tawny withering 163.936
CRR073319Tawny withering 249.965
CRR073320Tawny withering 339.220