Gene detail

Detail information of GWHGAAZE030367

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279968.2	0	PREDICTED: nuclear poly(A) polymerase 1 [Vitis vinifera]
COG	YP_005369064.1	1E-36	polynucleotide Adenyltransferase
Swissprot	tr\|Q9LMT2\|PAPS1_ARATH	0	Nuclear poly(A) polymerase 1 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|A0A061FVR9\|A0A061FVR9_THECC	0	Poly(A) polymerase 1 isoform 1 {ECO:0000313\|EMBL:EOY21148.1}
TAIR10	AT1G17980.1	0	poly(A) polymerase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42369133	42376669	+
GWHAAZE00000009	mRNA	42369133	42376669	+
GWHAAZE00000009	exon	42369133	42369249	+
GWHAAZE00000009	exon	42369335	42369412	+
GWHAAZE00000009	exon	42369507	42369614	+
GWHAAZE00000009	exon	42373208	42373270	+
GWHAAZE00000009	exon	42373366	42373527	+
GWHAAZE00000009	exon	42373742	42373805	+
GWHAAZE00000009	exon	42374110	42374240	+
GWHAAZE00000009	exon	42374372	42374434	+
GWHAAZE00000009	exon	42374524	42374853	+
GWHAAZE00000009	exon	42375160	42375324	+
GWHAAZE00000009	exon	42375431	42376369	+
GWHAAZE00000009	exon	42376592	42376669	+
GWHAAZE00000009	CDS	42369133	42369249	+
GWHAAZE00000009	CDS	42369335	42369412	+
GWHAAZE00000009	CDS	42369507	42369614	+
GWHAAZE00000009	CDS	42373208	42373270	+
GWHAAZE00000009	CDS	42373366	42373527	+
GWHAAZE00000009	CDS	42373742	42373805	+
GWHAAZE00000009	CDS	42374110	42374240	+
GWHAAZE00000009	CDS	42374372	42374434	+
GWHAAZE00000009	CDS	42374524	42374853	+
GWHAAZE00000009	CDS	42375160	42375324	+
GWHAAZE00000009	CDS	42375431	42376369	+
GWHAAZE00000009	CDS	42376592	42376669	+

Transcript Sequence
>GWHTAAZE030401 ATGGGTAGTACCGGCTTTAACAATCAGAACAATGCGAATCGACTCGGCATTACAGAACCAATTTCATTGGGTGGACCAACCGATTATGATGTAATCAGAACTCGTGAACTCGAAAAGTTCTTAGCAAACGTGGGATTGTACGAGAGTCAGGAGGAAGCCATTAGTAGGGAGGAAGTGCTTGGAAGGCTAGACCAGATTGTGAAAATGTGGGTAAAAGCCATAAGCCGTGCCAAGGGTTTAAATGAGCAGTTGGTGCACGAAGCGAATGCTAAGATTTTCACTTTCGGTTCTTATCGTCTTGGGGTGCATGGCCCTGGTGCGGATATAGATACGCTTTGTGTGGGACCGAGACACGCGACACGAGATGAAGATTTTTTTGGGGAGCTGTATAGAATGCTCATAGAGATGCCTGAAGTAACAGAGATGCATCCTGTACCTGATGCTCATGTTCCGGTGATGAGATTCAAGTTCAATGGGGTTTCCATAGATCTTCTTTATGCAAAACTATCACTTTGGGTTATTCCCGAAGCAGATCCGCTATTTTGCTTGTGGTTTTTGATTGATACTGCTTGGGTTAGATCATATGCTATAGGAGTTATAGTGGTGCAGGACTTGGATATTTCACAAGACTCGATACTACAGAATGCAGATGACCAGACAGTTCGTAGTCTTAATGGTTGTAGAGTTACTGACCAAATTCTTCGCTTGGTGCCAAATATTCAGAATTTTCGCACAACATTGAGATGCATGAGGTTTTGGGCAAAGCGGCGAGGTGTTTATTCTAATGTTGCAGGGTTTCTAGGTGGTATAAATTGGGCATTGCTTGTTGCTCGCATATGCCAGCTGTATCCCAACGCACTGCCCAATATGCTAGTGTCTCGGTTCTTCAGGGTCTACACTCAGTGGCGTTGGCCCAATCCAGTTTTGCTCTGCGCTATAGAAGAAGGATCACTTGGACTTCAAGTTTGGGATCCAAGGAGAAATCCCAAGGACAGGTTCCACCTGATGCCTATTATTACTCCGGCCTATCCTAGTATGAACTCTAGCTATAATGTTTCATCAAGTACATTGAGGATAATGACCGAAGAGTTTGAGAGGGGAAACAAGATTTGCGAGGCTTTGGAGGCAAACAAGGTTGATTGGGATAAACTTTTTGAGGCTCATCTTTTTTTTGAAGCATACAAGAATTATTTGCAGATTGACATCTCTGCAGCCAACGATGATGACCTCAGAAACTGGAAAGGCTGGGTTGAATCTCGCTTGCGTCAACTTACATTAAAGATTGAGAGGCACACTTTCAACATGCTTCAATGCCATCCACACCCAGGCGAATTTTCCGACAAATCAAAGCCATTGCATTGCTCTTACTTCATGGGTCTTCAACGGAAGCAGGGAGTTCCTGTAAATGAAGGTGAACAGTTTGATATAAGGCTTACGGTTGAGGAATTCAAGCATGCCGTTGGCATGTACATATTGTGGAAACCTGGCATGGAAATCCATGTAACGCACGTAAGACGTAGGAATATCCCTAATTACGTATTCCCTGGCGGGGTCCGGCCTATTCGATCTGTCCGACCAGCTGGAGAGAGTAGAAGGGTTTTAGAACCGAAGGTTCCTAACCATGCCGAAACAGGCAATGCTCCTGATGAAACAGATAAGGCAAGGAAGAGAAAGCAAGAGGATGATATTCCAGGGACTAACTCGAGAGCTACAAAGTGTGTATTGGGTGTTGCTTTTTCAAGTGAGGGAGTTTCCGAGAATGGCCCTTGTATCGGTACTGTTACATCATTTCCTATAAAGGTGGAAAATAATTTAAATGAAGCAATGGAGTTAAAGAACCCAACCGAGCTCTCTTCTCAGAATGGCAATGAAAGTGATGAATCTGTGAAGTGCAGTCCACCCACTGGGCTTGTATCTGCTAATCCTGGGTCTTCAAGCTCTAGGGAAGCTGAGAAAATTGCAATTGAGAAGATAATGGCCGGTCCGTATGGTTCGCACCAAGCTTTTGCTGAAGAACTCGAGGAGCTTGAAGATGACCTTGAATATAAAAATCAAGTGAAAAACTTTGGTGGGACCACAAAGGGAGGCTCTGTGGAATCGTTCTCGATGACAAAAGAAGCTACAACGGTTCCTGTAACAACTACCACAAGGGCGGGTCCTTGCTCCAGCGTACATTTAAATGGGAGCTTAGAAGAGCTTGAGGTCTTATCTGCTAAACCTGCCACTGATCTGATGGCACCATTGCTCAACGGGATCCATTCCACATCTACAGCACAGCAGAAGCCAGTTATCAGGTAA

Network for GWHGAAZE030367

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04928.18	PAP_central	16	386	3.30E-108
PF01909.24	NTP_transf_2	84	163	4.40E-10
PF04926.16	PAP_RNA-bind	390	448	9.90E-12
PF04926.16	PAP_RNA-bind	447	520	2.30E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14376	PAP	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0043631	biological_process	RNA polyadenylation
GO:0031123	biological_process	RNA 3'-end processing
GO:0003723	molecular_function	RNA binding
GO:0016779	molecular_function	nucleotidyltransferase activity
GO:0004652	molecular_function	polynucleotide adenylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.151
	SRR3591706	second leaf	19.886
	SRR3591707	mature leaf	26.627
	SRR3591708	Shoot apex	22.867
	SRR3591709	Stem	38.085
	SRR3591710	White floral bud	56.194
	SRR3591711	White flower	58.347
	SRR3591712	Green floral bud	42.743
	SRR3591713	Yellow flower	46.028
SRP173429	SRR8316895	Juvenile bud stage	19.517
	SRR8316896	Juvenile bud stage	25.386
	SRR8316897	Juvenile bud stage	14.028
	SRR8316894	Third green stage	10.589
	SRR8316900	Third green stage	33.889
	SRR8316901	Third green stage	30.333
	SRR8316898	Complete white stage	20.025
	SRR8316899	Complete white stage	55.124
	SRR8316903	Complete white stage	34.369
	SRR8316902	Silver flowering stage	16.605
	SRR8316904	Silver flowering stage	24.556
	SRR8316905	Silver flowering stage	11.785
	SRR8316906	Gold flowering stage	31.405
	SRR8316907	Gold flowering stage	31.978
	SRR8316908	Gold flowering stage	40.461
SRP132670	SRR6706286	Control	28.681
	SRR6706287	Light intensity 50%	30.604
	SRR6706288	Light intensity 20%	33.932
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.419
	CNS0095593	Slightly white alabastrum(diploid) 2	18.021
	CNS0095594	Slightly white alabastrum(diploid) 3	15.882
	CNS0095595	Whole white alabastrum(diploid) 2	19.898
	CNS0095596	Whole white alabastrum(diploid) 3	14.874
	CNS0095597	Whole white alabastrum(diploid) 4	17.572
	CNS0095598	Silvery flower (diploied) 1	29.158
	CNS0095599	Silvery flower (diploied) 2	24.121
	CNS0095600	Silvery flower (diploied) 3	48.940
	CNS0095601	Golden flower (diploid) 1	23.008
	CNS0095602	Golden flower (diploid) 2	37.643
	CNS0095603	Golden flower (diploid) 3	41.125
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.738
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.789
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.700
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.082
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.239
	CNS0095610	Silvery flower (tetraploid) 1	60.286
	CNS0095611	Silvery flower (tetraploid) 2	70.100
	CNS0095612	Silvery flower (tetraploid) 3	98.777
	CNS0095613	Golden flower (tetraploid) 1	41.827
	CNS0095614	Golden flower (tetraploid) 2	57.064
	CNS0095615	Golden flower (tetraploid) 3	44.625
CRA001975	CRR073297	Stem 1	31.282
	CRR073298	Stem 2	27.602
	CRR073299	Stem 3	27.063
	CRR073300	Leaf 1	30.740
	CRR073301	Leaf 2	30.799
	CRR073302	Leaf 3	24.137
	CRR073303	Juvenile bud 1	26.310
	CRR073304	Juvenile bud 2	20.874
	CRR073305	Juvenile bud 3	35.020
	CRR073306	Third green 1	24.526
	CRR073307	Third green 2	19.654
	CRR073308	Third green 3	24.722
	CRR073309	Second white 1	28.618
	CRR073310	Second white 2	30.317
	CRR073311	Second white 3	23.486
	CRR073312	Silver flowering 1	22.834
	CRR073313	Silver flowering 2	26.424
	CRR073314	Silver flowering 3	21.064
	CRR073315	Gold flowering 1	21.035
	CRR073316	Gold flowering 2	32.750
	CRR073317	Gold flowering 3	21.402
	CRR073318	Tawny withering 1	28.508
	CRR073319	Tawny withering 2	23.805
	CRR073320	Tawny withering 3	24.836