Detail information of GWHGAAZE030358


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004238867.10PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum lycopersicum]
COGYP_004357703.10ATP synthase subunit beta
Swissprottr|P17614|ATPBM_NICPL0ATP synthase subunit beta, mitochondrial (Precursor)
trEMBLtr|K4BX20|K4BX20_SOLLC0ATP synthase subunit beta {ECO:0000256|RuleBase:RU003553}
TAIR10AT5G08680.10ATP synthase alpha/beta family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4223719742241138-
GWHAAZE00000009mRNA4223719742241138-
GWHAAZE00000009exon4223719742237310-
GWHAAZE00000009exon4223824842238559-
GWHAAZE00000009exon4223864442238868-
GWHAAZE00000009exon4223898542239143-
GWHAAZE00000009exon4223922542239328-
GWHAAZE00000009exon4223941942239536-
GWHAAZE00000009exon4223967442239762-
GWHAAZE00000009exon4223989842239973-
GWHAAZE00000009exon4224066242241138-
GWHAAZE00000009CDS4224066242241138-
GWHAAZE00000009CDS4223989842239973-
GWHAAZE00000009CDS4223967442239762-
GWHAAZE00000009CDS4223941942239536-
GWHAAZE00000009CDS4223922542239328-
GWHAAZE00000009CDS4223898542239143-
GWHAAZE00000009CDS4223864442238868-
GWHAAZE00000009CDS4223824842238559-
GWHAAZE00000009CDS4223719742237310-
Transcript Sequence

Network for GWHGAAZE030358

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0038map00190 Oxidative phosphorylation
map04714 Thermogenesis
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) GOslim:cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) GOslim:cellular_component
GO:0006754 ATP biosynthetic process GOslim:biological_process
GO:0042773 ATP synthesis coupled electron transport GOslim:biological_process
GO:0046034 ATP metabolic process GOslim:biological_process
GO:1902600 proton transmembrane transport GOslim:biological_process
GO:0015986 ATP synthesis coupled proton transport GOslim:biological_process
map04723 Retrograde endocannabinoid signaling
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism GOslim:molecular_function
GO:0008137 NADH dehydrogenase (ubiquinone) activity GOslim:molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H GOslim:molecular_function
GO:0004222 metalloendopeptidase activity GOslim:molecular_function
GO:0051536 iron-sulfur cluster binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11421.9Synthase_beta1489.80E-10
PF02874.24ATP-synt_ab_N891551.00E-19
PF00006.26ATP-synt_ab2124332.70E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02133ATPeF1B, ATP5B, ATP2 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0006754biological_processATP biosynthetic process
GO:0015986biological_processATP synthesis coupled proton transport
GO:0046034biological_processATP metabolic process
GO:1902600biological_processproton transmembrane transport
GO:0000275cellular_componentmitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf192.993
SRR3591706second leaf84.538
SRR3591707mature leaf67.993
SRR3591708Shoot apex121.558
SRR3591709Stem126.431
SRR3591710White floral bud155.604
SRR3591711White flower170.782
SRR3591712Green floral bud207.547
SRR3591713Yellow flower135.471
SRP173429 SRR8316895Juvenile bud stage 121.901
SRR8316896Juvenile bud stage 189.115
SRR8316897Juvenile bud stage 86.564
SRR8316894Third green stage 80.586
SRR8316900Third green stage 281.577
SRR8316901Third green stage 257.748
SRR8316898Complete white stage 74.948
SRR8316899Complete white stage 212.912
SRR8316903Complete white stage 132.693
SRR8316902Silver flowering stage96.425
SRR8316904Silver flowering stage110.394
SRR8316905Silver flowering stage58.288
SRR8316906Gold flowering stage 212.522
SRR8316907Gold flowering stage 221.026
SRR8316908Gold flowering stage 243.840
SRP132670SRR6706286Control215.078
SRR6706287Light intensity 50%211.511
SRR6706288Light intensity 20%233.031
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1133.783
CNS0095593Slightly white alabastrum(diploid) 2127.925
CNS0095594Slightly white alabastrum(diploid) 3127.762
CNS0095595Whole white alabastrum(diploid) 2139.886
CNS0095596Whole white alabastrum(diploid) 3155.320
CNS0095597Whole white alabastrum(diploid) 4131.471
CNS0095598Silvery flower (diploied) 1106.020
CNS0095599Silvery flower (diploied) 2101.195
CNS0095600Silvery flower (diploied) 3247.075
CNS0095601Golden flower (diploid) 193.996
CNS0095602Golden flower (diploid) 2191.804
CNS0095603Golden flower (diploid) 3180.218
CNS0095604Slightly white alabastrum(tetraploid) 1194.205
CNS0095605Slightly white alabastrum(tetraploid) 2159.011
CNS0095606Slightly white alabastrum(tetraploid) 3227.149
CNS0095607Whole white alabastrum(tetraploid) 1152.536
CNS0095608Whole white alabastrum(tetraploid) 2139.102
CNS0095609Whole white alabastrum(tetraploid) 3264.645
CNS0095610Silvery flower (tetraploid) 1251.878
CNS0095611Silvery flower (tetraploid) 2286.053
CNS0095612Silvery flower (tetraploid) 3239.758
CNS0095613Golden flower (tetraploid) 198.972
CNS0095614Golden flower (tetraploid) 2206.777
CNS0095615Golden flower (tetraploid) 3100.472
CRA001975CRR073297Stem 1202.257
CRR073298Stem 2190.557
CRR073299Stem 3209.022
CRR073300Leaf 1270.848
CRR073301Leaf 2267.853
CRR073302Leaf 3257.922
CRR073303Juvenile bud 1329.760
CRR073304Juvenile bud 2276.660
CRR073305Juvenile bud 3356.168
CRR073306Third green 1105.197
CRR073307Third green 279.026
CRR073308Third green 390.885
CRR073309Second white 1249.208
CRR073310Second white 2136.001
CRR073311Second white 3120.674
CRR073312Silver flowering 1107.097
CRR073313Silver flowering 2128.349
CRR073314Silver flowering 3112.478
CRR073315Gold flowering 170.108
CRR073316Gold flowering 2102.772
CRR073317Gold flowering 3104.644
CRR073318Tawny withering 1173.360
CRR073319Tawny withering 2142.193
CRR073320Tawny withering 3155.902