Detail information of GWHGAAZE030308


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275719.10PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Vitis vinifera]
COGNP_490235.17E-11WD repeat-containing protein
Swissprottr|Q9T014|SPA2_ARATH0.000000002Protein SPA1-RELATED 2
trEMBLtr|D7SP76|D7SP76_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17455.3}
TAIR10AT4G18905.14E-137Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4133437141339618-
GWHAAZE00000009mRNA4133437141339618-
GWHAAZE00000009exon4133950041339618-
GWHAAZE00000009exon4133889841339091-
GWHAAZE00000009exon4133817141338250-
GWHAAZE00000009exon4133799641338076-
GWHAAZE00000009exon4133776441337887-
GWHAAZE00000009exon4133692941336987-
GWHAAZE00000009exon4133675941336833-
GWHAAZE00000009exon4133619941336269-
GWHAAZE00000009exon4133595441336107-
GWHAAZE00000009exon4133535641335430-
GWHAAZE00000009exon4133514841335246-
GWHAAZE00000009exon4133470741334823-
GWHAAZE00000009exon4133455641334585-
GWHAAZE00000009exon4133437141334451-
GWHAAZE00000009CDS4133950041339618-
GWHAAZE00000009CDS4133889841339091-
GWHAAZE00000009CDS4133817141338250-
GWHAAZE00000009CDS4133799641338076-
GWHAAZE00000009CDS4133776441337887-
GWHAAZE00000009CDS4133692941336987-
GWHAAZE00000009CDS4133675941336833-
GWHAAZE00000009CDS4133619941336269-
GWHAAZE00000009CDS4133595441336107-
GWHAAZE00000009CDS4133535641335430-
GWHAAZE00000009CDS4133514841335246-
GWHAAZE00000009CDS4133470741334823-
GWHAAZE00000009CDS4133455641334585-
GWHAAZE00000009CDS4133437141334451-
Transcript Sequence

Network for GWHGAAZE030308

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402532840.005
PF00400.33WD404024310.00016
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.000
SRR3591706second leaf15.834
SRR3591707mature leaf11.573
SRR3591708Shoot apex26.988
SRR3591709Stem19.664
SRR3591710White floral bud18.870
SRR3591711White flower31.920
SRR3591712Green floral bud28.350
SRR3591713Yellow flower24.375
SRP173429 SRR8316895Juvenile bud stage 23.987
SRR8316896Juvenile bud stage 31.245
SRR8316897Juvenile bud stage 14.064
SRR8316894Third green stage 12.257
SRR8316900Third green stage 35.254
SRR8316901Third green stage 32.337
SRR8316898Complete white stage 9.209
SRR8316899Complete white stage 35.322
SRR8316903Complete white stage 15.082
SRR8316902Silver flowering stage12.892
SRR8316904Silver flowering stage16.600
SRR8316905Silver flowering stage8.230
SRR8316906Gold flowering stage 28.355
SRR8316907Gold flowering stage 26.130
SRR8316908Gold flowering stage 21.016
SRP132670SRR6706286Control33.494
SRR6706287Light intensity 50%30.176
SRR6706288Light intensity 20%33.555
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.870
CNS0095593Slightly white alabastrum(diploid) 226.392
CNS0095594Slightly white alabastrum(diploid) 326.583
CNS0095595Whole white alabastrum(diploid) 220.310
CNS0095596Whole white alabastrum(diploid) 324.602
CNS0095597Whole white alabastrum(diploid) 419.631
CNS0095598Silvery flower (diploied) 120.354
CNS0095599Silvery flower (diploied) 217.666
CNS0095600Silvery flower (diploied) 327.028
CNS0095601Golden flower (diploid) 116.956
CNS0095602Golden flower (diploid) 221.214
CNS0095603Golden flower (diploid) 317.988
CNS0095604Slightly white alabastrum(tetraploid) 124.557
CNS0095605Slightly white alabastrum(tetraploid) 219.877
CNS0095606Slightly white alabastrum(tetraploid) 336.656
CNS0095607Whole white alabastrum(tetraploid) 116.090
CNS0095608Whole white alabastrum(tetraploid) 211.127
CNS0095609Whole white alabastrum(tetraploid) 326.413
CNS0095610Silvery flower (tetraploid) 131.981
CNS0095611Silvery flower (tetraploid) 231.369
CNS0095612Silvery flower (tetraploid) 319.155
CNS0095613Golden flower (tetraploid) 117.067
CNS0095614Golden flower (tetraploid) 226.333
CNS0095615Golden flower (tetraploid) 316.467
CRA001975CRR073297Stem 133.271
CRR073298Stem 227.330
CRR073299Stem 325.749
CRR073300Leaf 128.280
CRR073301Leaf 230.835
CRR073302Leaf 330.316
CRR073303Juvenile bud 139.217
CRR073304Juvenile bud 218.890
CRR073305Juvenile bud 339.307
CRR073306Third green 16.791
CRR073307Third green 27.879
CRR073308Third green 38.872
CRR073309Second white 111.871
CRR073310Second white 212.920
CRR073311Second white 316.522
CRR073312Silver flowering 115.881
CRR073313Silver flowering 220.085
CRR073314Silver flowering 312.617
CRR073315Gold flowering 114.139
CRR073316Gold flowering 223.587
CRR073317Gold flowering 312.305
CRR073318Tawny withering 136.182
CRR073319Tawny withering 237.117
CRR073320Tawny withering 338.644