Detail information of GWHGAAZE030279


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU40486.10hypothetical protein MIMGU_mgv1a003590mg [Erythranthe guttata]
COGNP_126055.11E-1163-hydroxy-3-methylglutaryl-coenzyme A reductase
Swissprottr|P48021|HMDH_CAMAC03-hydroxy-3-methylglutaryl-coenzyme A reductase
trEMBLtr|A0A022RJZ7|A0A022RJZ7_ERYGU03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}
TAIR10AT1G76490.10hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4092757440929776+
GWHAAZE00000009mRNA4092757440929776+
GWHAAZE00000009exon4092757440928532+
GWHAAZE00000009exon4092863940928820+
GWHAAZE00000009exon4092901340929776+
GWHAAZE00000009CDS4092757440928532+
GWHAAZE00000009CDS4092863940928820+
GWHAAZE00000009CDS4092901340929596+
GWHAAZE00000009three_prime_UTR4092959740929776+
Transcript Sequence

Network for GWHGAAZE030279

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00368.19HMG-CoA_red1905662.70E-142
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00021HMGCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900
AMPK signaling pathwaymap04152
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0015936biological_processcoenzyme A metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0008299biological_processisoprenoid biosynthetic process
GO:0050662molecular_functioncoenzyme binding
GO:0004420molecular_functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf69.262
SRR3591706second leaf18.933
SRR3591707mature leaf28.819
SRR3591708Shoot apex28.612
SRR3591709Stem84.847
SRR3591710White floral bud132.518
SRR3591711White flower187.196
SRR3591712Green floral bud42.231
SRR3591713Yellow flower156.100
SRP173429 SRR8316895Juvenile bud stage 105.697
SRR8316896Juvenile bud stage 41.398
SRR8316897Juvenile bud stage 74.615
SRR8316894Third green stage 12.959
SRR8316900Third green stage 13.664
SRR8316901Third green stage 27.579
SRR8316898Complete white stage 11.299
SRR8316899Complete white stage 191.291
SRR8316903Complete white stage 20.728
SRR8316902Silver flowering stage23.520
SRR8316904Silver flowering stage21.347
SRR8316905Silver flowering stage12.031
SRR8316906Gold flowering stage 55.694
SRR8316907Gold flowering stage 91.631
SRR8316908Gold flowering stage 70.843
SRP132670SRR6706286Control17.928
SRR6706287Light intensity 50%21.118
SRR6706288Light intensity 20%19.355
CNP0000432CNS0095592Slightly white alabastrum(diploid) 160.303
CNS0095593Slightly white alabastrum(diploid) 252.431
CNS0095594Slightly white alabastrum(diploid) 362.128
CNS0095595Whole white alabastrum(diploid) 244.573
CNS0095596Whole white alabastrum(diploid) 39.035
CNS0095597Whole white alabastrum(diploid) 439.634
CNS0095598Silvery flower (diploied) 1231.966
CNS0095599Silvery flower (diploied) 2222.281
CNS0095600Silvery flower (diploied) 3103.889
CNS0095601Golden flower (diploid) 1208.355
CNS0095602Golden flower (diploid) 2206.705
CNS0095603Golden flower (diploid) 3202.842
CNS0095604Slightly white alabastrum(tetraploid) 19.483
CNS0095605Slightly white alabastrum(tetraploid) 28.656
CNS0095606Slightly white alabastrum(tetraploid) 39.322
CNS0095607Whole white alabastrum(tetraploid) 112.944
CNS0095608Whole white alabastrum(tetraploid) 215.037
CNS0095609Whole white alabastrum(tetraploid) 310.803
CNS0095610Silvery flower (tetraploid) 142.004
CNS0095611Silvery flower (tetraploid) 224.871
CNS0095612Silvery flower (tetraploid) 336.104
CNS0095613Golden flower (tetraploid) 131.062
CNS0095614Golden flower (tetraploid) 239.609
CNS0095615Golden flower (tetraploid) 341.807
CRA001975CRR073297Stem 152.725
CRR073298Stem 242.747
CRR073299Stem 364.201
CRR073300Leaf 134.942
CRR073301Leaf 253.311
CRR073302Leaf 329.776
CRR073303Juvenile bud 134.316
CRR073304Juvenile bud 279.047
CRR073305Juvenile bud 385.891
CRR073306Third green 1104.846
CRR073307Third green 294.341
CRR073308Third green 396.684
CRR073309Second white 1109.430
CRR073310Second white 293.577
CRR073311Second white 3110.237
CRR073312Silver flowering 1267.188
CRR073313Silver flowering 2340.628
CRR073314Silver flowering 3320.182
CRR073315Gold flowering 131.892
CRR073316Gold flowering 2116.337
CRR073317Gold flowering 3145.437
CRR073318Tawny withering 183.702
CRR073319Tawny withering 2253.120
CRR073320Tawny withering 3106.454