Gene detail

Detail information of GWHGAAZE030276

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283154.1	1.66027E-87	PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Vitis vinifera]
COG	YP_003588051.1	0.00000002	glutamyl-tRNA synthetase
Swissprot	tr\|Q9FEA2\|SYE_ARATH	3E-81	Glutamate--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|D7U4Q0\|D7U4Q0_VITVI	6E-88	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37719.3}
TAIR10	AT5G64050.1	1E-68	glutamate tRNA synthetase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40897916	40900643	+
GWHAAZE00000009	mRNA	40897916	40900643	+
GWHAAZE00000009	exon	40897916	40898012	+
GWHAAZE00000009	exon	40898264	40898319	+
GWHAAZE00000009	exon	40898459	40898559	+
GWHAAZE00000009	exon	40898947	40899103	+
GWHAAZE00000009	exon	40899196	40899341	+
GWHAAZE00000009	exon	40900580	40900643	+
GWHAAZE00000009	CDS	40897916	40898012	+
GWHAAZE00000009	CDS	40898264	40898319	+
GWHAAZE00000009	CDS	40898459	40898559	+
GWHAAZE00000009	CDS	40898947	40899103	+
GWHAAZE00000009	CDS	40899196	40899341	+
GWHAAZE00000009	CDS	40900580	40900643	+

Transcript Sequence
>GWHTAAZE030310 ATGAATGGTCAGCATTTAAGATCCCTTCCATCAGAAGAGTTGACCAAGATTCTTGGTGAACGCTGGAAGAGCACTGGTATCCTCACAGAATCAGAGGAACTTGTGGAATACTCAAAACTGTTTAAGAAATTGAATACTGATACTCAAGATTTGGAAGCTGTTCAGCTGCTAAAGGACAGTGTTGACTTGATAACAGATTCAGACAAGTCTCTTTCAAACCTGCTATCTTATCCATTATACGCTACTCTGGCGAGTCCCGAAGGTAAACAAGTCTTGGAAGATGGACTTTCCGAAGTTGCAGCTAGTTTGTTAGCTGCCTATGATAGTGGCGAGCTTTTTAGTGCACTTGAAGAAGGCAAAGCTGGGTGGCAGAAGTGGGTGAAAAGCTTTGGGAAATCATTGAACCGCAAGGGAAAATCTCTCTTCATGCCCCTCCGAGTTTTGCTAACAGGAAAGCTCCATGGCCCAGAAATGGGAGATAGCATACTTTTGATCCACAGAGCTGGAACAAGTGATGTTGTAGCACCTGAAGCTGGGTTTGTTACATTGGATGAAAGGTACAAGCTGAGAGCTTATGCGCCTGAATTACCAAACAAGTTTCTCTCATTGCTAATGCCTTAG

Network for GWHGAAZE030276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01885	EARS, gltX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860
		Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0000049	molecular_function	tRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.260
	SRR3591706	second leaf	10.736
	SRR3591707	mature leaf	9.877
	SRR3591708	Shoot apex	16.908
	SRR3591709	Stem	22.200
	SRR3591710	White floral bud	15.697
	SRR3591711	White flower	13.868
	SRR3591712	Green floral bud	17.871
	SRR3591713	Yellow flower	19.073
SRP173429	SRR8316895	Juvenile bud stage	26.330
	SRR8316896	Juvenile bud stage	40.972
	SRR8316897	Juvenile bud stage	15.212
	SRR8316894	Third green stage	14.720
	SRR8316900	Third green stage	27.522
	SRR8316901	Third green stage	36.185
	SRR8316898	Complete white stage	14.002
	SRR8316899	Complete white stage	40.547
	SRR8316903	Complete white stage	27.898
	SRR8316902	Silver flowering stage	15.904
	SRR8316904	Silver flowering stage	21.273
	SRR8316905	Silver flowering stage	9.807
	SRR8316906	Gold flowering stage	33.599
	SRR8316907	Gold flowering stage	33.627
	SRR8316908	Gold flowering stage	34.471
SRP132670	SRR6706286	Control	10.658
	SRR6706287	Light intensity 50%	12.942
	SRR6706288	Light intensity 20%	15.374
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.759
	CNS0095593	Slightly white alabastrum(diploid) 2	24.162
	CNS0095594	Slightly white alabastrum(diploid) 3	19.665
	CNS0095595	Whole white alabastrum(diploid) 2	23.493
	CNS0095596	Whole white alabastrum(diploid) 3	18.377
	CNS0095597	Whole white alabastrum(diploid) 4	17.926
	CNS0095598	Silvery flower (diploied) 1	25.746
	CNS0095599	Silvery flower (diploied) 2	22.633
	CNS0095600	Silvery flower (diploied) 3	7.196
	CNS0095601	Golden flower (diploid) 1	23.196
	CNS0095602	Golden flower (diploid) 2	13.364
	CNS0095603	Golden flower (diploid) 3	10.542
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.439
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.003
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.822
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.075
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.363
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.714
	CNS0095610	Silvery flower (tetraploid) 1	18.244
	CNS0095611	Silvery flower (tetraploid) 2	7.698
	CNS0095612	Silvery flower (tetraploid) 3	15.437
	CNS0095613	Golden flower (tetraploid) 1	12.867
	CNS0095614	Golden flower (tetraploid) 2	13.730
	CNS0095615	Golden flower (tetraploid) 3	18.968
CRA001975	CRR073297	Stem 1	23.153
	CRR073298	Stem 2	21.395
	CRR073299	Stem 3	5.050
	CRR073300	Leaf 1	25.338
	CRR073301	Leaf 2	30.319
	CRR073302	Leaf 3	3.892
	CRR073303	Juvenile bud 1	5.512
	CRR073304	Juvenile bud 2	0.459
	CRR073305	Juvenile bud 3	4.548
	CRR073306	Third green 1	0.612
	CRR073307	Third green 2	0.212
	CRR073308	Third green 3	0.763
	CRR073309	Second white 1	1.310
	CRR073310	Second white 2	1.105
	CRR073311	Second white 3	0.957
	CRR073312	Silver flowering 1	1.768
	CRR073313	Silver flowering 2	0.172
	CRR073314	Silver flowering 3	0.248
	CRR073315	Gold flowering 1	2.685
	CRR073316	Gold flowering 2	9.685
	CRR073317	Gold flowering 3	0.321
	CRR073318	Tawny withering 1	11.691
	CRR073319	Tawny withering 2	21.639
	CRR073320	Tawny withering 3	14.101