Detail information of GWHGAAZE030259


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14496.10unnamed protein product [Coffea canephora]
COGYP_003549730.10.0000002glycosyl transferase family protein
Swissprottr|Q0WQD2|GAUT3_ARATH0Probable galacturonosyltransferase 3
trEMBLtr|A0A068V1F8|A0A068V1F8_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_87 {ECO:0000313|EMBL:CDP14496.1}
TAIR10AT4G38270.10galacturonosyltransferase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4065914240663905-
GWHAAZE00000009mRNA4065914240663905-
GWHAAZE00000009exon4066385240663905-
GWHAAZE00000009exon4066162440661761-
GWHAAZE00000009exon4066140740661550-
GWHAAZE00000009exon4066098540661319-
GWHAAZE00000009exon4065994740660892-
GWHAAZE00000009exon4065914240659417-
GWHAAZE00000009CDS4066385240663905-
GWHAAZE00000009CDS4066162440661761-
GWHAAZE00000009CDS4066140740661550-
GWHAAZE00000009CDS4066098540661319-
GWHAAZE00000009CDS4065994740660892-
GWHAAZE00000009CDS4065914240659417-
Transcript Sequence

Network for GWHGAAZE030259

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01501.21Glyco_transf_82946032.50E-93
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13648GAUT Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.350
SRR3591706second leaf7.875
SRR3591707mature leaf6.310
SRR3591708Shoot apex9.763
SRR3591709Stem25.530
SRR3591710White floral bud12.115
SRR3591711White flower13.972
SRR3591712Green floral bud15.901
SRR3591713Yellow flower10.282
SRP173429 SRR8316895Juvenile bud stage 6.913
SRR8316896Juvenile bud stage 10.700
SRR8316897Juvenile bud stage 4.710
SRR8316894Third green stage 4.706
SRR8316900Third green stage 15.997
SRR8316901Third green stage 13.301
SRR8316898Complete white stage 8.652
SRR8316899Complete white stage 17.735
SRR8316903Complete white stage 13.645
SRR8316902Silver flowering stage5.193
SRR8316904Silver flowering stage8.784
SRR8316905Silver flowering stage3.385
SRR8316906Gold flowering stage 7.910
SRR8316907Gold flowering stage 8.092
SRR8316908Gold flowering stage 5.374
SRP132670SRR6706286Control5.774
SRR6706287Light intensity 50%6.673
SRR6706288Light intensity 20%6.757
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.597
CNS0095593Slightly white alabastrum(diploid) 212.349
CNS0095594Slightly white alabastrum(diploid) 315.896
CNS0095595Whole white alabastrum(diploid) 212.355
CNS0095596Whole white alabastrum(diploid) 314.560
CNS0095597Whole white alabastrum(diploid) 411.890
CNS0095598Silvery flower (diploied) 115.055
CNS0095599Silvery flower (diploied) 29.966
CNS0095600Silvery flower (diploied) 317.030
CNS0095601Golden flower (diploid) 19.751
CNS0095602Golden flower (diploid) 216.787
CNS0095603Golden flower (diploid) 317.125
CNS0095604Slightly white alabastrum(tetraploid) 115.175
CNS0095605Slightly white alabastrum(tetraploid) 213.711
CNS0095606Slightly white alabastrum(tetraploid) 315.235
CNS0095607Whole white alabastrum(tetraploid) 111.740
CNS0095608Whole white alabastrum(tetraploid) 214.221
CNS0095609Whole white alabastrum(tetraploid) 313.967
CNS0095610Silvery flower (tetraploid) 113.482
CNS0095611Silvery flower (tetraploid) 219.818
CNS0095612Silvery flower (tetraploid) 38.363
CNS0095613Golden flower (tetraploid) 17.084
CNS0095614Golden flower (tetraploid) 211.323
CNS0095615Golden flower (tetraploid) 35.434
CRA001975CRR073297Stem 18.901
CRR073298Stem 28.631
CRR073299Stem 310.448
CRR073300Leaf 19.123
CRR073301Leaf 29.140
CRR073302Leaf 38.819
CRR073303Juvenile bud 110.380
CRR073304Juvenile bud 28.754
CRR073305Juvenile bud 311.409
CRR073306Third green 12.131
CRR073307Third green 22.324
CRR073308Third green 32.669
CRR073309Second white 12.026
CRR073310Second white 22.283
CRR073311Second white 31.316
CRR073312Silver flowering 11.335
CRR073313Silver flowering 20.588
CRR073314Silver flowering 32.527
CRR073315Gold flowering 14.793
CRR073316Gold flowering 25.079
CRR073317Gold flowering 33.317
CRR073318Tawny withering 111.063
CRR073319Tawny withering 211.858
CRR073320Tawny withering 310.503