Gene detail

Detail information of GWHGAAZE030249

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278617.1	0	PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera]
COG	YP_007059321.1	8E-71	K+ transport protein
Swissprot	tr\|Q9LMA1\|FMO1_ARATH	2E-141	Probable flavin-containing monooxygenase 1
trEMBL	tr\|D7U4Y2\|D7U4Y2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37801.3}
TAIR10	AT1G19250.1	1E-113	flavin-dependent monooxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40500109	40503096	-
GWHAAZE00000009	mRNA	40500109	40503096	-
GWHAAZE00000009	exon	40500109	40500451	-
GWHAAZE00000009	exon	40501586	40501944	-
GWHAAZE00000009	exon	40502026	40502201	-
GWHAAZE00000009	exon	40502289	40502526	-
GWHAAZE00000009	exon	40502659	40503096	-
GWHAAZE00000009	CDS	40502659	40503096	-
GWHAAZE00000009	CDS	40502289	40502526	-
GWHAAZE00000009	CDS	40502026	40502201	-
GWHAAZE00000009	CDS	40501586	40501944	-
GWHAAZE00000009	CDS	40500109	40500451	-

Transcript Sequence
>GWHTAAZE030283 ATGGAGAGGCAAGTAGCCATAATAGGAGCTGGTATCAGTGGCCTCTTAGCCTGCAAGTATTGCCTGTCAAAGGGTTTCCGTCCGACCGTCTTCGAGAGCCGCAGCAGCATTGGCGGTGTGTGGACCAAGACGGTCGAAACCACTAAACTCCAGACCTCGAAATTACTCTACCAATTCTCCGATTTCCCGTGGCCCCCTTCAGTAACAGATGAGTTCCCCACCCAACAAGAAGTTTTCGACTACTTGCAGTCCTACGCTACTCATTTTGATCTACTCCGCCATGTCAAATTCAACTCTAAAGCCGTAAAAATCAGCTATGAAGGGCCAAATGATTCGGAGATGAACGCGTGGACACTCTGGGGTGGCACAGGCAAGCCGTTTAGCTCAAAAGGAAAATGGAATCTCACGGTACAGGACACTCGATCCCTCTCAACCGAGGATTACAAAGTGGACTTTGTGATTCTGTGTGTGGGAAGGTTCAGTGACGTGCCAAATATACCCGAATTTCCTCCTAATAAAGGTCCTGAAGTGTTTGATGGTGAAGTGATACACTCGATGGACTATGCCGACATGGATTATTCAGCTGCTGCTGAATTTGTCAAAGGAAAGCGCGTCACTGTTGTTGGCCTCCAAAAATCTGCACTGGACATTGCAATCGAATGCTCAACTGTAAATGGGCTAGAACATCCGTGTACGGTGATATACAGGAGGGAACATTGGAACGTACCAGATTACCTTCCATGGGGAGTACCCTTGGGGTATTTTTACCTAAATCGCTTCTCGGAGCTTTTGATTCATAAGCCCGGTGAAGGTTTTCTATTTGGCATACTCGCAACAATTCTGTCACCTTTGAGATGGGGATTCTCAAAATTTGTTGAAAGTTACATAAAATCAAAACTTCAGCTTGAAAGGTTTGGAATGGTACCAAAACAAAGTTTCTTGAATCAAATCAGTTCTTGTTTAATCGCAACTGTGCCCAAGGACTTCTATAACAGAGTTGACAAGGGACTTATCAAACTTCAGAAGGCCCAAAATTTCTGGTTCAACAAAGAAGGGGTTTCGGTCAATAGCGAGGCCGAATCCGTAAAAACAGATTTGGTGATATTAGCTACTGGATATAGTAGTGTTGGAAAGCTGAAAGATGTTTTTGTATCTCCATATTTCCAGCAATGCATCGGGGGTTCGCCTGATACTATTGTTCCTCTCTACAGGGAATGCATTCATCCTAGGATTCCGCAATTGGCAATTATTGGATTCTCGGAGAGCGTATCGAATTTGTACACGTCAGAGATGAGGTGCCGGTGGCTAGCGGAGCTTCTAGACGGGGCATTCAAGCTACCCAGCATCAAGGAAATGGAGAAAGACGTAGGAAAATGGGATGAATTCATGAAGAAATACTCAGGTGAATATTATAGAAGGTCTTGTATTGGTGCAATACACATATGGTACAATGATCAGTTGTGCAAAGATATGGGGTGGAACCCCAAGAGGAAGAAGGGAATCATTGCTGAATTGTTTCAGCCTTATGGTCCATTGGATTATACTCACCCTTAA

Network for GWHGAAZE030249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00743.20	FMO-like	3	496	1.60E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00485	FMO	Drug metabolism - cytochrome P450	map00982

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004499	molecular_function	N,N-dimethylaniline monooxygenase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.811
	SRR3591706	second leaf	29.402
	SRR3591707	mature leaf	28.166
	SRR3591708	Shoot apex	42.294
	SRR3591709	Stem	50.905
	SRR3591710	White floral bud	73.474
	SRR3591711	White flower	34.185
	SRR3591712	Green floral bud	91.443
	SRR3591713	Yellow flower	20.162
SRP173429	SRR8316895	Juvenile bud stage	35.981
	SRR8316896	Juvenile bud stage	36.970
	SRR8316897	Juvenile bud stage	27.911
	SRR8316894	Third green stage	15.875
	SRR8316900	Third green stage	61.182
	SRR8316901	Third green stage	39.190
	SRR8316898	Complete white stage	36.933
	SRR8316899	Complete white stage	29.116
	SRR8316903	Complete white stage	45.123
	SRR8316902	Silver flowering stage	27.394
	SRR8316904	Silver flowering stage	43.434
	SRR8316905	Silver flowering stage	24.914
	SRR8316906	Gold flowering stage	62.427
	SRR8316907	Gold flowering stage	61.516
	SRR8316908	Gold flowering stage	33.809
SRP132670	SRR6706286	Control	58.771
	SRR6706287	Light intensity 50%	66.721
	SRR6706288	Light intensity 20%	74.624
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.949
	CNS0095593	Slightly white alabastrum(diploid) 2	42.560
	CNS0095594	Slightly white alabastrum(diploid) 3	23.512
	CNS0095595	Whole white alabastrum(diploid) 2	33.309
	CNS0095596	Whole white alabastrum(diploid) 3	44.370
	CNS0095597	Whole white alabastrum(diploid) 4	37.265
	CNS0095598	Silvery flower (diploied) 1	20.358
	CNS0095599	Silvery flower (diploied) 2	25.986
	CNS0095600	Silvery flower (diploied) 3	75.062
	CNS0095601	Golden flower (diploid) 1	23.412
	CNS0095602	Golden flower (diploid) 2	47.758
	CNS0095603	Golden flower (diploid) 3	47.013
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.496
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.826
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.663
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	75.822
	CNS0095610	Silvery flower (tetraploid) 1	60.803
	CNS0095611	Silvery flower (tetraploid) 2	68.444
	CNS0095612	Silvery flower (tetraploid) 3	111.359
	CNS0095613	Golden flower (tetraploid) 1	32.329
	CNS0095614	Golden flower (tetraploid) 2	45.402
	CNS0095615	Golden flower (tetraploid) 3	29.229
CRA001975	CRR073297	Stem 1	45.346
	CRR073298	Stem 2	45.044
	CRR073299	Stem 3	54.986
	CRR073300	Leaf 1	48.582
	CRR073301	Leaf 2	52.494
	CRR073302	Leaf 3	72.618
	CRR073303	Juvenile bud 1	52.473
	CRR073304	Juvenile bud 2	60.444
	CRR073305	Juvenile bud 3	49.317
	CRR073306	Third green 1	133.457
	CRR073307	Third green 2	99.786
	CRR073308	Third green 3	105.282
	CRR073309	Second white 1	93.136
	CRR073310	Second white 2	62.235
	CRR073311	Second white 3	47.953
	CRR073312	Silver flowering 1	38.787
	CRR073313	Silver flowering 2	48.687
	CRR073314	Silver flowering 3	39.348
	CRR073315	Gold flowering 1	16.080
	CRR073316	Gold flowering 2	22.491
	CRR073317	Gold flowering 3	15.521
	CRR073318	Tawny withering 1	91.927
	CRR073319	Tawny withering 2	86.082
	CRR073320	Tawny withering 3	57.481