Gene detail

Detail information of GWHGAAZE030242

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN05484.1	3.0247E-129	Putative NAC domain-containing protein 94 [Glycine soja]
Swissprot	tr\|Q9FIW5\|NAC94_ARATH	2E-55	Putative NAC domain-containing protein 94
trEMBL	tr\|I1LPE9\|I1LPE9_SOYBN	1E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G02540.1}
TAIR10	AT2G17040.1	2E-81	NAC domain containing protein 36

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40370498	40371656	+
GWHAAZE00000009	mRNA	40370498	40371656	+
GWHAAZE00000009	exon	40370498	40370663	+
GWHAAZE00000009	exon	40370756	40371027	+
GWHAAZE00000009	exon	40371195	40371656	+
GWHAAZE00000009	CDS	40370498	40370663	+
GWHAAZE00000009	CDS	40370756	40371027	+
GWHAAZE00000009	CDS	40371195	40371656	+

Transcript Sequence
>GWHTAAZE030276 ATGGATGAATCGTCGTTGGATTTTGATTTGCCGGGGTTCCGATTTCACCCGACCGAGGAAGAGCTTCTCGACTTTTACCTAAAAAATATGGTTTTTGGGAAGAAATTACGCTACGACATTATTGGTTTTCTCAACATTTACCACCATGACCCTTGGGACTTGCCAGGGATGGCAAAGATTGGGGAAAGAGAGTGGTACTTCTTTGTTCCCAGAGACAAAAGGCATGGCAGTGGAGGAAGGCCTAACCGAACCACTGAACACGGGTTTTGGAAGGCTACTGGGTCGGACCGTAAGATATTCAATTTGTCGGATCCAAAGCGCATCATAGGATTAAAGAAGACTCTGGTTTTCTACAAGGGAAGAGCACCACGTGGATGCAAAACTGATTGGGTCATGAATGAGTATCGCTTGCCCGACAATTCTTGCTCCTCCTCCAAGAACATAGTACTATGCAAGATTTATAGAAAGGCAACCTCATTGAAGGAGCTAGAGCAAAGGGCTTCAATTCAAGAAGAGGAAACGAAGGCAATTGATCAATCCTTTACTCCTCCATCCTATCCAACAACACCACCAATGGACACCTTCTCATTTACTAATCAACGCGATGACACGCTGGCACCAGCAGCAGCAGCAGCAAGCCACGTGGTCTTCAAGAAGGAAGATGAAGAGCTACTACTAGCACTAGATGAAAGCATAATGTATGATGAAGTTGAGGAAAGTACTAGTAATAATGGGAGCACTAATAATTCTTTACAATTACCAAAGGGTAAAGAGAACTTGACAGAGCTCCAATTACCCAAATTCAACATGGAGTGGACCCAAGACTCATTTTGGACGCAGTTACGAAGCCCTTGGCTTGACAATTTGATGACCCCATACGCCAATGTACTCAATTTCTAA

Network for GWHGAAZE030242

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	11	137	4.00E-34

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.316
	SRR3591706	second leaf	31.573
	SRR3591707	mature leaf	42.792
	SRR3591708	Shoot apex	35.878
	SRR3591709	Stem	112.714
	SRR3591710	White floral bud	32.234
	SRR3591711	White flower	38.514
	SRR3591712	Green floral bud	35.009
	SRR3591713	Yellow flower	3.196
SRP173429	SRR8316895	Juvenile bud stage	77.874
	SRR8316896	Juvenile bud stage	48.736
	SRR8316897	Juvenile bud stage	32.964
	SRR8316894	Third green stage	23.035
	SRR8316900	Third green stage	32.849
	SRR8316901	Third green stage	41.153
	SRR8316898	Complete white stage	1.588
	SRR8316899	Complete white stage	118.036
	SRR8316903	Complete white stage	4.235
	SRR8316902	Silver flowering stage	2.243
	SRR8316904	Silver flowering stage	1.117
	SRR8316905	Silver flowering stage	0.576
	SRR8316906	Gold flowering stage	1.865
	SRR8316907	Gold flowering stage	2.811
	SRR8316908	Gold flowering stage	6.990
SRP132670	SRR6706286	Control	22.795
	SRR6706287	Light intensity 50%	30.450
	SRR6706288	Light intensity 20%	22.179
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.160
	CNS0095593	Slightly white alabastrum(diploid) 2	80.841
	CNS0095594	Slightly white alabastrum(diploid) 3	84.286
	CNS0095595	Whole white alabastrum(diploid) 2	42.026
	CNS0095596	Whole white alabastrum(diploid) 3	11.579
	CNS0095597	Whole white alabastrum(diploid) 4	35.372
	CNS0095598	Silvery flower (diploied) 1	138.697
	CNS0095599	Silvery flower (diploied) 2	54.856
	CNS0095600	Silvery flower (diploied) 3	21.202
	CNS0095601	Golden flower (diploid) 1	101.513
	CNS0095602	Golden flower (diploid) 2	58.378
	CNS0095603	Golden flower (diploid) 3	59.331
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.255
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.953
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.830
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.731
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.784
	CNS0095610	Silvery flower (tetraploid) 1	1.889
	CNS0095611	Silvery flower (tetraploid) 2	2.872
	CNS0095612	Silvery flower (tetraploid) 3	4.523
	CNS0095613	Golden flower (tetraploid) 1	0.657
	CNS0095614	Golden flower (tetraploid) 2	1.955
	CNS0095615	Golden flower (tetraploid) 3	0.239
CRA001975	CRR073297	Stem 1	57.290
	CRR073298	Stem 2	59.803
	CRR073299	Stem 3	64.783
	CRR073300	Leaf 1	61.804
	CRR073301	Leaf 2	88.464
	CRR073302	Leaf 3	45.875
	CRR073303	Juvenile bud 1	46.589
	CRR073304	Juvenile bud 2	42.961
	CRR073305	Juvenile bud 3	83.590
	CRR073306	Third green 1	4.817
	CRR073307	Third green 2	5.507
	CRR073308	Third green 3	9.342
	CRR073309	Second white 1	0.577
	CRR073310	Second white 2	0.447
	CRR073311	Second white 3	0.435
	CRR073312	Silver flowering 1	0.693
	CRR073313	Silver flowering 2	0.285
	CRR073314	Silver flowering 3	0.256
	CRR073315	Gold flowering 1	52.141
	CRR073316	Gold flowering 2	47.323
	CRR073317	Gold flowering 3	40.792
	CRR073318	Tawny withering 1	49.284
	CRR073319	Tawny withering 2	62.564
	CRR073320	Tawny withering 3	68.846