Detail information of GWHGAAZE030195


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009791634.10PREDICTED: WD-40 repeat-containing protein MSI2-like [Nicotiana sylvestris]
COGYP_001865069.14E-17hypothetical protein Npun_F1419
Swissprottr|O22468|MSI2_ARATH0WD-40 repeat-containing protein MSI2
trEMBLtr|K4B421|K4B421_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g111590.2.1}
TAIR10AT2G16780.11E-168Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3934555339350558-
GWHAAZE00000009mRNA3934555339350558-
GWHAAZE00000009exon3934555339345757-
GWHAAZE00000009exon3934687839346973-
GWHAAZE00000009exon3934785639347980-
GWHAAZE00000009exon3934894039349083-
GWHAAZE00000009exon3934920539349528-
GWHAAZE00000009exon3935025039350558-
GWHAAZE00000009CDS3935025039350558-
GWHAAZE00000009CDS3934920539349528-
GWHAAZE00000009CDS3934894039349083-
GWHAAZE00000009CDS3934785639347980-
GWHAAZE00000009CDS3934687839346973-
GWHAAZE00000009CDS3934555339345757-
Transcript Sequence

Network for GWHGAAZE030195

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12265.9CAF1C_H4-bd15862.40E-23
PF00400.33WD401611940.15
PF00400.33WD402082430.05
PF00400.33WD402482860.037
PF00400.33WD402923307.50E-06
PF00400.33WD403513860.0012
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K10752RBBP4, HAT2, CAF1, MIS16 Cellular senescence map04218

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf55.659
SRR3591706second leaf15.501
SRR3591707mature leaf17.282
SRR3591708Shoot apex76.162
SRR3591709Stem41.502
SRR3591710White floral bud29.768
SRR3591711White flower47.019
SRR3591712Green floral bud41.689
SRR3591713Yellow flower26.435
SRP173429 SRR8316895Juvenile bud stage 27.670
SRR8316896Juvenile bud stage 41.752
SRR8316897Juvenile bud stage 24.781
SRR8316894Third green stage 14.637
SRR8316900Third green stage 46.013
SRR8316901Third green stage 36.086
SRR8316898Complete white stage 14.137
SRR8316899Complete white stage 69.674
SRR8316903Complete white stage 18.219
SRR8316902Silver flowering stage11.719
SRR8316904Silver flowering stage13.283
SRR8316905Silver flowering stage6.789
SRR8316906Gold flowering stage 18.160
SRR8316907Gold flowering stage 15.869
SRR8316908Gold flowering stage 40.648
SRP132670SRR6706286Control32.110
SRR6706287Light intensity 50%33.834
SRR6706288Light intensity 20%42.653
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.989
CNS0095593Slightly white alabastrum(diploid) 234.851
CNS0095594Slightly white alabastrum(diploid) 330.156
CNS0095595Whole white alabastrum(diploid) 228.357
CNS0095596Whole white alabastrum(diploid) 323.987
CNS0095597Whole white alabastrum(diploid) 420.144
CNS0095598Silvery flower (diploied) 130.672
CNS0095599Silvery flower (diploied) 233.407
CNS0095600Silvery flower (diploied) 326.385
CNS0095601Golden flower (diploid) 121.381
CNS0095602Golden flower (diploid) 224.532
CNS0095603Golden flower (diploid) 325.977
CNS0095604Slightly white alabastrum(tetraploid) 141.126
CNS0095605Slightly white alabastrum(tetraploid) 236.273
CNS0095606Slightly white alabastrum(tetraploid) 363.018
CNS0095607Whole white alabastrum(tetraploid) 122.603
CNS0095608Whole white alabastrum(tetraploid) 220.302
CNS0095609Whole white alabastrum(tetraploid) 344.467
CNS0095610Silvery flower (tetraploid) 147.653
CNS0095611Silvery flower (tetraploid) 245.840
CNS0095612Silvery flower (tetraploid) 338.141
CNS0095613Golden flower (tetraploid) 122.597
CNS0095614Golden flower (tetraploid) 233.679
CNS0095615Golden flower (tetraploid) 312.502
CRA001975CRR073297Stem 141.158
CRR073298Stem 240.280
CRR073299Stem 349.667
CRR073300Leaf 142.510
CRR073301Leaf 242.029
CRR073302Leaf 347.371
CRR073303Juvenile bud 150.858
CRR073304Juvenile bud 236.029
CRR073305Juvenile bud 354.535
CRR073306Third green 117.091
CRR073307Third green 215.014
CRR073308Third green 313.977
CRR073309Second white 113.917
CRR073310Second white 210.934
CRR073311Second white 36.612
CRR073312Silver flowering 15.515
CRR073313Silver flowering 29.039
CRR073314Silver flowering 33.864
CRR073315Gold flowering 137.136
CRR073316Gold flowering 249.115
CRR073317Gold flowering 339.074
CRR073318Tawny withering 156.401
CRR073319Tawny withering 246.422
CRR073320Tawny withering 358.483