Gene detail

Detail information of GWHGAAZE030165

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529258.1	2.7446E-132	mta/sah nucleosidase, putative [Ricinus communis]
COG	YP_001984241.1	3E-27	putative methylthioadenosine/S-adenosyl homocysteine nucleosidase
Swissprot	tr\|Q9T0I8\|MTN1_ARATH	3E-115	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1
trEMBL	tr\|B9STD9\|B9STD9_RICCO	1E-132	Mta/sah nucleosidase, putative {ECO:0000313\|EMBL:EEF33136.1}
TAIR10	AT4G38800.1	1E-84	methylthioadenosine nucleosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	38907495	38912397	+
GWHAAZE00000009	mRNA	38907495	38912397	+
GWHAAZE00000009	exon	38907495	38907549	+
GWHAAZE00000009	exon	38907637	38907700	+
GWHAAZE00000009	exon	38908686	38908777	+
GWHAAZE00000009	exon	38909249	38909355	+
GWHAAZE00000009	exon	38909745	38909819	+
GWHAAZE00000009	exon	38910529	38910603	+
GWHAAZE00000009	exon	38911360	38911452	+
GWHAAZE00000009	exon	38912281	38912397	+
GWHAAZE00000009	CDS	38907495	38907549	+
GWHAAZE00000009	CDS	38907637	38907700	+
GWHAAZE00000009	CDS	38908686	38908777	+
GWHAAZE00000009	CDS	38909249	38909355	+
GWHAAZE00000009	CDS	38909745	38909819	+
GWHAAZE00000009	CDS	38910529	38910603	+
GWHAAZE00000009	CDS	38911360	38911452	+
GWHAAZE00000009	CDS	38912281	38912397	+

Transcript Sequence
>GWHTAAZE030199 ATGGCTTCTTCATCATCCGATAACCGCCCTATCTCCACCATCGTCATCGTAATAGCTATGCAAACTGAAGCCCTTCCTCTTGTCGACAAGTTCCAGCTTTCTGAAGATCAGAATTCTGTGTTCCCAAAAGGGGTTCCATGGATCAGGTATCATGGTGTTTACAAGGATCTTAATATTAATATCATCTGGCCAGGAAAGGACACTGCATTGGGTGTTGACAGTGTAGGTACTGTTTCTGCATCTCTTGTGACTTATGCTTCTATTCAAGCACTACAACCAGACCTCATCATAAATGCTGGCACTGCTGGTGGATTTAAGGCAAAAGGAGCTTGCATTGGTGATGTGTTTCTTGCATCGGAAGTTGCTTTTCATGATAGAAGGATACCTATCCCTGTTTTTGATCTGTATGGAGTTGGTTTGCGGCAGGTTTGCTCATCCCCAAATATTTTGAAGGAGCTTAACCTAAAGGTTGGCAAGTTATCAACTGGCGACTCTTTAGATATGTGCCCACATGATGAAGCATCCATCATTGCAAATGATGCAACGGTTAAAGATATGGAGGGAGCAGCGATTGCATATGTAGCAGATATTTTCAAAGTCCCTGCAATATTTATAAAAGCCGTGACCGATATTGTGGATGGTGACAAGCCAACTCGGAGGAGTTTTTGCAAAATCTAA

Network for GWHGAAZE030165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01048.21	PNP_UDP_1	13	215	3.00E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01244	MTN	Metabolic pathways	map01100
K01244	MTN	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009116	biological_process	nucleoside metabolic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	144.615
	SRR3591706	second leaf	91.077
	SRR3591707	mature leaf	102.162
	SRR3591708	Shoot apex	89.144
	SRR3591709	Stem	154.020
	SRR3591710	White floral bud	137.517
	SRR3591711	White flower	159.755
	SRR3591712	Green floral bud	131.520
	SRR3591713	Yellow flower	169.525
SRP173429	SRR8316895	Juvenile bud stage	67.998
	SRR8316896	Juvenile bud stage	90.500
	SRR8316897	Juvenile bud stage	45.269
	SRR8316894	Third green stage	32.608
	SRR8316900	Third green stage	120.629
	SRR8316901	Third green stage	116.087
	SRR8316898	Complete white stage	65.472
	SRR8316899	Complete white stage	227.198
	SRR8316903	Complete white stage	95.004
	SRR8316902	Silver flowering stage	57.086
	SRR8316904	Silver flowering stage	74.112
	SRR8316905	Silver flowering stage	32.415
	SRR8316906	Gold flowering stage	145.574
	SRR8316907	Gold flowering stage	135.089
	SRR8316908	Gold flowering stage	164.724
SRP132670	SRR6706286	Control	89.057
	SRR6706287	Light intensity 50%	94.194
	SRR6706288	Light intensity 20%	104.980
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	71.442
	CNS0095593	Slightly white alabastrum(diploid) 2	84.564
	CNS0095594	Slightly white alabastrum(diploid) 3	69.893
	CNS0095595	Whole white alabastrum(diploid) 2	74.147
	CNS0095596	Whole white alabastrum(diploid) 3	65.698
	CNS0095597	Whole white alabastrum(diploid) 4	66.131
	CNS0095598	Silvery flower (diploied) 1	108.190
	CNS0095599	Silvery flower (diploied) 2	96.326
	CNS0095600	Silvery flower (diploied) 3	176.881
	CNS0095601	Golden flower (diploid) 1	106.606
	CNS0095602	Golden flower (diploid) 2	185.369
	CNS0095603	Golden flower (diploid) 3	179.498
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.867
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.508
	CNS0095606	Slightly white alabastrum(tetraploid) 3	92.138
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.847
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.606
	CNS0095609	Whole white alabastrum(tetraploid) 3	84.692
	CNS0095610	Silvery flower (tetraploid) 1	155.077
	CNS0095611	Silvery flower (tetraploid) 2	176.146
	CNS0095612	Silvery flower (tetraploid) 3	112.886
	CNS0095613	Golden flower (tetraploid) 1	128.824
	CNS0095614	Golden flower (tetraploid) 2	160.054
	CNS0095615	Golden flower (tetraploid) 3	130.013
CRA001975	CRR073297	Stem 1	63.027
	CRR073298	Stem 2	65.065
	CRR073299	Stem 3	60.394
	CRR073300	Leaf 1	83.187
	CRR073301	Leaf 2	68.146
	CRR073302	Leaf 3	75.696
	CRR073303	Juvenile bud 1	106.794
	CRR073304	Juvenile bud 2	105.084
	CRR073305	Juvenile bud 3	103.154
	CRR073306	Third green 1	43.974
	CRR073307	Third green 2	44.394
	CRR073308	Third green 3	46.998
	CRR073309	Second white 1	90.223
	CRR073310	Second white 2	69.760
	CRR073311	Second white 3	51.116
	CRR073312	Silver flowering 1	60.867
	CRR073313	Silver flowering 2	61.624
	CRR073314	Silver flowering 3	67.784
	CRR073315	Gold flowering 1	61.868
	CRR073316	Gold flowering 2	72.108
	CRR073317	Gold flowering 3	64.068
	CRR073318	Tawny withering 1	88.942
	CRR073319	Tawny withering 2	91.316
	CRR073320	Tawny withering 3	77.589