Gene detail

Detail information of GWHGAAZE030119

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270024.1	0	PREDICTED: amidophosphoribosyltransferase, chloroplastic [Vitis vinifera]
COG	YP_003504704.1	4E-127	amidophosphoribosyltransferase
Swissprot	tr\|Q9STG9\|ASE2_ARATH	0	Amidophosphoribosyltransferase 2, chloroplastic (Precursor)
trEMBL	tr\|F6I180\|F6I180_VITVI	0	Amidophosphoribosyltransferase {ECO:0000256\|PIRNR:PIRNR000485}
TAIR10	AT4G34740.1	6E-172	GLN phosphoribosyl pyrophosphate amidotransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	38527059	38528273	-
GWHAAZE00000009	mRNA	38527059	38528273	-
GWHAAZE00000009	exon	38527059	38528273	-
GWHAAZE00000009	CDS	38527059	38528273	-

Transcript Sequence
>GWHTAAZE030153 GCCTCTAGTCTCTCTCATGCAACTGAAAAACCCTACTCTCTCTCTAAACCCCCATCACCAATCCCCTCCTCTATCTTCTCCAAAACCCTCCCGAAATCCTACCCCCTCTCCCACAAACCCACAATCAAAAAAACCCTATTCACACTAACCGCCAAAAACCCCATAGCCGATGTAATCTCCGGAGATTTCGACGACGATGATAAGCCTCGGGAGGAGTGCGGCGTCGTCGGAATCTACGGCGACCCAGAAGCCTCCCGCCTCTGCTACCTCGCCCTCCACGCTCTCCAACACCGCGGTCAGGAAGGCGCTGGCATCGTCGCTGTCAATGAGAATAACGTGCTCCAGTCCGTGACCGGTGTCGGGCTTGTGTCGGAGGTTTTCAACCAATCAAAGCTCGACAAGTTACCGGGCGATAAGGCCATAGGCCATGTCCGTTATTCAACTGCCGGTTCTAACATGTTGAAGAATGTGCAGCCCTTTGTGGCTGGTTACAGATTTGGGTCTGTGGGTGTGGCCCATAATGGGAATTTGGTGAATTATCAAACACTTAGGGCGGAGCTTGAAGAGAGTGGGTCTATTTTTAACACTAGTAGCGATACTGAGGTGGTTCTTCATCTAATAGCTATTTCGAAGGCTAGGCCTTTCTTTGCGAGGATTGTTGAGGCTTGTGAGAAGCTTCAGGGGGCTTATTCAATGGTGTTTTTGACTGAGGATAAGTTGGTTGCTGTTAGGGACCCACATGGGTTTAGGCCATTGGTGATGGGGAGGAGGAGCAATGGGGCGGTTGTTTTTGCATCTGAAACTTGTGCATTGGATTTGATTGAGGCTACTTACGAGAGAGAAGTGTACCCTGGTGAAGTAATTATTGTTGATAAAGATGGAATTCAAACACTTTGTTTGATGCCTCACCCTGAACCCAAGTCTTGTATCTTTGAGCATATTTACTTTGCTTTGCCTAGCTCTGAGGTGTTTGGGAGGTCCGTTTACGGGTCGCGCCAACTGTTTGGGGAAATTCTTGCGACAGTAGCACCAGTCGATTGCGACGTTGTGATTGCAGTGCCGGACTCCGGTGTGGTGGCGGCGCTTGGCTATGCAGCCAAGGCCGGGGTGGCTTTCCAGCAAGGCCTAATTCGGTCACATTATGTGGGGCGGACCTTTATCGAGCCATCACAAAAGATTAGGGACTTTGGGGTGAAGCTGAAGCTCGCCAGTTAA

Network for GWHGAAZE030119

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13537.7	GATase_7	154	271	7.60E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00764	purF, PPAT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0009113	biological_process	purine nucleobase biosynthetic process
GO:0009116	biological_process	nucleoside metabolic process
GO:0004044	molecular_function	amidophosphoribosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.798
	SRR3591706	second leaf	25.544
	SRR3591707	mature leaf	28.424
	SRR3591708	Shoot apex	9.214
	SRR3591709	Stem	16.398
	SRR3591710	White floral bud	8.882
	SRR3591711	White flower	16.890
	SRR3591712	Green floral bud	4.166
	SRR3591713	Yellow flower	7.897
SRP173429	SRR8316895	Juvenile bud stage	7.836
	SRR8316896	Juvenile bud stage	9.438
	SRR8316897	Juvenile bud stage	4.871
	SRR8316894	Third green stage	4.188
	SRR8316900	Third green stage	10.127
	SRR8316901	Third green stage	10.259
	SRR8316898	Complete white stage	6.173
	SRR8316899	Complete white stage	15.117
	SRR8316903	Complete white stage	6.950
	SRR8316902	Silver flowering stage	3.768
	SRR8316904	Silver flowering stage	5.437
	SRR8316905	Silver flowering stage	2.639
	SRR8316906	Gold flowering stage	8.621
	SRR8316907	Gold flowering stage	9.125
	SRR8316908	Gold flowering stage	11.560
SRP132670	SRR6706286	Control	15.349
	SRR6706287	Light intensity 50%	14.322
	SRR6706288	Light intensity 20%	13.861
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.195
	CNS0095593	Slightly white alabastrum(diploid) 2	12.015
	CNS0095594	Slightly white alabastrum(diploid) 3	11.077
	CNS0095595	Whole white alabastrum(diploid) 2	9.045
	CNS0095596	Whole white alabastrum(diploid) 3	9.042
	CNS0095597	Whole white alabastrum(diploid) 4	8.710
	CNS0095598	Silvery flower (diploied) 1	7.099
	CNS0095599	Silvery flower (diploied) 2	7.713
	CNS0095600	Silvery flower (diploied) 3	10.634
	CNS0095601	Golden flower (diploid) 1	3.616
	CNS0095602	Golden flower (diploid) 2	7.206
	CNS0095603	Golden flower (diploid) 3	8.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.936
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.010
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.474
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.257
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.374
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.921
	CNS0095610	Silvery flower (tetraploid) 1	4.702
	CNS0095611	Silvery flower (tetraploid) 2	2.788
	CNS0095612	Silvery flower (tetraploid) 3	3.778
	CNS0095613	Golden flower (tetraploid) 1	3.325
	CNS0095614	Golden flower (tetraploid) 2	3.257
	CNS0095615	Golden flower (tetraploid) 3	4.071
CRA001975	CRR073297	Stem 1	12.162
	CRR073298	Stem 2	10.693
	CRR073299	Stem 3	14.236
	CRR073300	Leaf 1	12.792
	CRR073301	Leaf 2	13.081
	CRR073302	Leaf 3	11.543
	CRR073303	Juvenile bud 1	12.847
	CRR073304	Juvenile bud 2	8.029
	CRR073305	Juvenile bud 3	14.034
	CRR073306	Third green 1	8.680
	CRR073307	Third green 2	8.331
	CRR073308	Third green 3	12.838
	CRR073309	Second white 1	7.850
	CRR073310	Second white 2	5.265
	CRR073311	Second white 3	5.877
	CRR073312	Silver flowering 1	5.432
	CRR073313	Silver flowering 2	5.420
	CRR073314	Silver flowering 3	2.952
	CRR073315	Gold flowering 1	27.197
	CRR073316	Gold flowering 2	39.066
	CRR073317	Gold flowering 3	65.982
	CRR073318	Tawny withering 1	12.562
	CRR073319	Tawny withering 2	14.518
	CRR073320	Tawny withering 3	16.508