Detail information of GWHGAAZE030086


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009785998.10PREDICTED: DNA replication licensing factor MCM4 [Nicotiana sylvestris]
COGYP_001737781.13E-130MCM family protein
Swissprottr|Q0WVF5|MCM4_ARATH0DNA replication licensing factor MCM4
trEMBLtr|M1D202|M1D202_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400079535}
TAIR10AT2G16440.10Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3797891537985262-
GWHAAZE00000009mRNA3797891537985262-
GWHAAZE00000009exon3797891537979178-
GWHAAZE00000009exon3797928537979421-
GWHAAZE00000009exon3797950637979584-
GWHAAZE00000009exon3797966437979744-
GWHAAZE00000009exon3798023337980394-
GWHAAZE00000009exon3798049637980592-
GWHAAZE00000009exon3798095337981113-
GWHAAZE00000009exon3798128737981385-
GWHAAZE00000009exon3798149437981706-
GWHAAZE00000009exon3798204737982160-
GWHAAZE00000009exon3798225037982375-
GWHAAZE00000009exon3798245337982524-
GWHAAZE00000009exon3798262037982752-
GWHAAZE00000009exon3798353437983615-
GWHAAZE00000009exon3798371537983816-
GWHAAZE00000009exon3798394437984588-
GWHAAZE00000009exon3798522637985262-
GWHAAZE00000009CDS3798522637985262-
GWHAAZE00000009CDS3798394437984588-
GWHAAZE00000009CDS3798371537983816-
GWHAAZE00000009CDS3798353437983615-
GWHAAZE00000009CDS3798262037982752-
GWHAAZE00000009CDS3798245337982524-
GWHAAZE00000009CDS3798225037982375-
GWHAAZE00000009CDS3798204737982160-
GWHAAZE00000009CDS3798149437981706-
GWHAAZE00000009CDS3798128737981385-
GWHAAZE00000009CDS3798095337981113-
GWHAAZE00000009CDS3798049637980592-
GWHAAZE00000009CDS3798023337980394-
GWHAAZE00000009CDS3797966437979744-
GWHAAZE00000009CDS3797950637979584-
GWHAAZE00000009CDS3797928537979421-
GWHAAZE00000009CDS3797891537979178-
Transcript Sequence

Network for GWHGAAZE030086

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14551.7MCM_N1262083.20E-13
PF17207.4MCM_OB2273414.50E-33
PF00493.24MCM4006225.00E-101
PF17855.2MCM_lid6387241.40E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02212MCM4, CDC54 DNA replication map03030
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName
GO:0006270biological_processDNA replication initiation
GO:0006260biological_processDNA replication
GO:0042555cellular_componentMCM complex
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.911
SRR3591706second leaf7.751
SRR3591707mature leaf1.211
SRR3591708Shoot apex63.796
SRR3591709Stem6.763
SRR3591710White floral bud1.981
SRR3591711White flower1.154
SRR3591712Green floral bud3.150
SRR3591713Yellow flower0.249
SRP173429 SRR8316895Juvenile bud stage 8.524
SRR8316896Juvenile bud stage 7.467
SRR8316897Juvenile bud stage 4.390
SRR8316894Third green stage 2.464
SRR8316900Third green stage 2.855
SRR8316901Third green stage 1.310
SRR8316898Complete white stage 0.085
SRR8316899Complete white stage 1.373
SRR8316903Complete white stage 0.342
SRR8316902Silver flowering stage0.072
SRR8316904Silver flowering stage0.228
SRR8316905Silver flowering stage0.041
SRR8316906Gold flowering stage 0.069
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.172
SRP132670SRR6706286Control4.354
SRR6706287Light intensity 50%5.123
SRR6706288Light intensity 20%5.926
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.633
CNS0095593Slightly white alabastrum(diploid) 25.542
CNS0095594Slightly white alabastrum(diploid) 33.083
CNS0095595Whole white alabastrum(diploid) 22.828
CNS0095596Whole white alabastrum(diploid) 30.766
CNS0095597Whole white alabastrum(diploid) 42.233
CNS0095598Silvery flower (diploied) 18.737
CNS0095599Silvery flower (diploied) 212.920
CNS0095600Silvery flower (diploied) 33.157
CNS0095601Golden flower (diploid) 13.937
CNS0095602Golden flower (diploid) 21.868
CNS0095603Golden flower (diploid) 31.630
CNS0095604Slightly white alabastrum(tetraploid) 16.564
CNS0095605Slightly white alabastrum(tetraploid) 25.745
CNS0095606Slightly white alabastrum(tetraploid) 312.969
CNS0095607Whole white alabastrum(tetraploid) 13.150
CNS0095608Whole white alabastrum(tetraploid) 21.187
CNS0095609Whole white alabastrum(tetraploid) 33.706
CNS0095610Silvery flower (tetraploid) 10.476
CNS0095611Silvery flower (tetraploid) 21.042
CNS0095612Silvery flower (tetraploid) 31.576
CNS0095613Golden flower (tetraploid) 10.147
CNS0095614Golden flower (tetraploid) 20.078
CNS0095615Golden flower (tetraploid) 30.156
CRA001975CRR073297Stem 119.503
CRR073298Stem 215.456
CRR073299Stem 321.493
CRR073300Leaf 11.843
CRR073301Leaf 21.837
CRR073302Leaf 32.034
CRR073303Juvenile bud 11.742
CRR073304Juvenile bud 20.314
CRR073305Juvenile bud 31.335
CRR073306Third green 10.149
CRR073307Third green 20.106
CRR073308Third green 30.418
CRR073309Second white 10.079
CRR073310Second white 20.021
CRR073311Second white 30.118
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.203
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.314
CRR073316Gold flowering 21.028
CRR073317Gold flowering 30.362
CRR073318Tawny withering 114.847
CRR073319Tawny withering 29.198
CRR073320Tawny withering 319.397