Gene detail

Detail information of GWHGAAZE030071

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283597.1	2.5893E-178	PREDICTED: bifunctional phosphatase IMPL2, chloroplastic [Vitis vinifera]
COG	YP_423532.1	1E-89	fructose-1 6-bisphosphatase
Swissprot	tr\|Q6NPM8\|HIS7_ARATH	2E-159	Bifunctional phosphatase IMPL2, chloroplastic (Precursor)
trEMBL	tr\|D7U4M3\|D7U4M3_VITVI	3E-178	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37692.3}
TAIR10	AT4G39120.1	2E-127	myo-inositol monophosphatase like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37718635	37722747	+
GWHAAZE00000009	mRNA	37718635	37722747	+
GWHAAZE00000009	exon	37718635	37718812	+
GWHAAZE00000009	exon	37718973	37719051	+
GWHAAZE00000009	exon	37720243	37720337	+
GWHAAZE00000009	exon	37720431	37720480	+
GWHAAZE00000009	exon	37721027	37721151	+
GWHAAZE00000009	exon	37721377	37721443	+
GWHAAZE00000009	exon	37721857	37721946	+
GWHAAZE00000009	exon	37722170	37722281	+
GWHAAZE00000009	exon	37722434	37722747	+
GWHAAZE00000009	CDS	37718635	37718812	+
GWHAAZE00000009	CDS	37718973	37719051	+
GWHAAZE00000009	CDS	37720243	37720337	+
GWHAAZE00000009	CDS	37720431	37720480	+
GWHAAZE00000009	CDS	37721027	37721151	+
GWHAAZE00000009	CDS	37721377	37721443	+
GWHAAZE00000009	CDS	37721857	37721946	+
GWHAAZE00000009	CDS	37722170	37722281	+
GWHAAZE00000009	CDS	37722434	37722504	+
GWHAAZE00000009	three_prime_UTR	37722505	37722747	+

Transcript Sequence
>GWHTAAZE030105 ATGATCTCCACTTCAGCTCTCTCCAACGGAGTTCAAACCGCCGAATTAGGGTTTAGTGGAGACCACTCCGAGCTTGACCGGTTCGCCGATGTGGCCAATAAACTTGCGGATGCTGCTGGTGAAGTGATTCGGAAGTATTTTCGAAAGAGCTTCGACATTCTCGATAAGGAGGATTTGAGTCCTGTCACAATTGCTGATCAAGCAGCCGAGGAATCGATGATCGCGTTAATACTGGAGAATTTACCTACTCATGCAATTTATGGAGAGGAGAACGGTTGGAGGTGTAAAGAGAAGTTTGCAGATTATGTGTGGGTTTTAGATCCAATAGATGGGACAAAGAGTTTTATTACTGGGAAACCCTTGTTTGGTACTCTCATTGCTCTGCTACACAAAGGCAAACCGATTCTTGGCATAATTGATCAACCTGTTTTAAGAGAAAGATGGATTGGGATTACTGGAAAAAGAACTACGTTGAATGGTGATGAAGTCTCTACGCGCAATTGCTCAAAACTTTCACAAGCGTATCTGTACACAACTAGCCCACATTTATTCAGTGGAGAAGCTGAAGTGGCATTTGCTCGAGTTAGAAGTAAGGTAAAAGTGCCGTTATACGGCTGTGACTGTTATGCATATGCCCTTTTGGCCTCGGGTTATGTGGATCTTGTGATTGAATCTGGTCTCAAGCCATACGATTTTCTCTCACTGATACTGGTGATAGAAGGTGCGGGCGGAGTTATAACTGATTGGAAAGGGAATCAACTTAACTGGGAGGCTTCTTCAGATACACCCGTAACAAGTTTTAATGTATTGGCAGCTGGGGACAAACAACTTCACCAGCAAGCCTTGGATTCACTACAATGGCAGTAATATTAGCATTGAAATGTTTGGCTTCAATTTTCTAATCGCCTGCTAATATGGCCCATGGAGGGAGACGAGATGTACTGGCACAAATTGACTCCAATAATTAATCAAGAATGGCCCTTCTCTGTCTGATGTATTTAAATAATAATTTTACCGAGGGGCTATTTTATCGATAGAATTTTTATTGTTGTTAGGATTCATAAAAGCTCTGTTTTAAATTATTGCGGATGGTAACATGTCAATACCCAA

Network for GWHGAAZE030071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00459.26	Inositol_P	25	281	1.00E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18649	IMPL2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Ascorbate and aldarate metabolism	map00053
		Inositol phosphate metabolism	map00562
		Histidine metabolism	map00340
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0046854	biological_process	phosphatidylinositol phosphorylation
GO:0004401	molecular_function	histidinol-phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.764
	SRR3591706	second leaf	2.269
	SRR3591707	mature leaf	2.388
	SRR3591708	Shoot apex	5.581
	SRR3591709	Stem	14.203
	SRR3591710	White floral bud	94.620
	SRR3591711	White flower	68.193
	SRR3591712	Green floral bud	7.375
	SRR3591713	Yellow flower	75.307
SRP173429	SRR8316895	Juvenile bud stage	1.816
	SRR8316896	Juvenile bud stage	1.638
	SRR8316897	Juvenile bud stage	1.307
	SRR8316894	Third green stage	1.978
	SRR8316900	Third green stage	15.947
	SRR8316901	Third green stage	14.327
	SRR8316898	Complete white stage	68.792
	SRR8316899	Complete white stage	79.069
	SRR8316903	Complete white stage	144.764
	SRR8316902	Silver flowering stage	70.427
	SRR8316904	Silver flowering stage	85.776
	SRR8316905	Silver flowering stage	10.658
	SRR8316906	Gold flowering stage	33.037
	SRR8316907	Gold flowering stage	59.420
	SRR8316908	Gold flowering stage	44.871
SRP132670	SRR6706286	Control	16.758
	SRR6706287	Light intensity 50%	22.516
	SRR6706288	Light intensity 20%	18.713
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.198
	CNS0095593	Slightly white alabastrum(diploid) 2	3.339
	CNS0095594	Slightly white alabastrum(diploid) 3	1.723
	CNS0095595	Whole white alabastrum(diploid) 2	4.320
	CNS0095596	Whole white alabastrum(diploid) 3	1.237
	CNS0095597	Whole white alabastrum(diploid) 4	2.766
	CNS0095598	Silvery flower (diploied) 1	4.652
	CNS0095599	Silvery flower (diploied) 2	5.172
	CNS0095600	Silvery flower (diploied) 3	29.436
	CNS0095601	Golden flower (diploid) 1	11.590
	CNS0095602	Golden flower (diploid) 2	24.226
	CNS0095603	Golden flower (diploid) 3	24.139
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.334
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.477
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.020
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.363
	CNS0095610	Silvery flower (tetraploid) 1	52.444
	CNS0095611	Silvery flower (tetraploid) 2	17.076
	CNS0095612	Silvery flower (tetraploid) 3	16.286
	CNS0095613	Golden flower (tetraploid) 1	29.508
	CNS0095614	Golden flower (tetraploid) 2	43.368
	CNS0095615	Golden flower (tetraploid) 3	49.768
CRA001975	CRR073297	Stem 1	3.053
	CRR073298	Stem 2	2.959
	CRR073299	Stem 3	1.319
	CRR073300	Leaf 1	10.258
	CRR073301	Leaf 2	12.038
	CRR073302	Leaf 3	9.227
	CRR073303	Juvenile bud 1	17.345
	CRR073304	Juvenile bud 2	23.307
	CRR073305	Juvenile bud 3	40.312
	CRR073306	Third green 1	11.819
	CRR073307	Third green 2	29.371
	CRR073308	Third green 3	31.831
	CRR073309	Second white 1	10.761
	CRR073310	Second white 2	8.417
	CRR073311	Second white 3	12.643
	CRR073312	Silver flowering 1	14.387
	CRR073313	Silver flowering 2	12.161
	CRR073314	Silver flowering 3	18.074
	CRR073315	Gold flowering 1	1.387
	CRR073316	Gold flowering 2	1.055
	CRR073317	Gold flowering 3	0.876
	CRR073318	Tawny withering 1	4.374
	CRR073319	Tawny withering 2	3.525
	CRR073320	Tawny withering 3	3.512