Gene detail

Detail information of GWHGAAZE030062

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG29186.1	0	Bifunctional dihydrofolate reductase-thymidylate synthase [Gossypium arboreum]
COG	YP_005607786.1	4E-65	thymidylate synthase
Swissprot	tr\|P45350\|DRTS_DAUCA	0	Thymidylate synthase
trEMBL	tr\|W9SFP6\|W9SFP6_9ROSA	0	Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256\|PIRNR:PIRNR000389}
TAIR10	AT2G16370.1	0	thymidylate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37569603	37589121	+
GWHAAZE00000009	mRNA	37569603	37589121	+
GWHAAZE00000009	exon	37569603	37570099	+
GWHAAZE00000009	exon	37570748	37570922	+
GWHAAZE00000009	exon	37571533	37571682	+
GWHAAZE00000009	exon	37574465	37574626	+
GWHAAZE00000009	exon	37576087	37576209	+
GWHAAZE00000009	exon	37576307	37576396	+
GWHAAZE00000009	exon	37576515	37576587	+
GWHAAZE00000009	exon	37576787	37576851	+
GWHAAZE00000009	exon	37583806	37584335	+
GWHAAZE00000009	exon	37584414	37584816	+
GWHAAZE00000009	exon	37584917	37584921	+
GWHAAZE00000009	exon	37585190	37585255	+
GWHAAZE00000009	exon	37586277	37586351	+
GWHAAZE00000009	exon	37586444	37586609	+
GWHAAZE00000009	exon	37586714	37586804	+
GWHAAZE00000009	exon	37588074	37588180	+
GWHAAZE00000009	exon	37588342	37588538	+
GWHAAZE00000009	exon	37589030	37589121	+
GWHAAZE00000009	CDS	37569603	37570099	+
GWHAAZE00000009	CDS	37570748	37570922	+
GWHAAZE00000009	CDS	37571533	37571682	+
GWHAAZE00000009	CDS	37574465	37574626	+
GWHAAZE00000009	CDS	37576087	37576209	+
GWHAAZE00000009	CDS	37576307	37576396	+
GWHAAZE00000009	CDS	37576515	37576587	+
GWHAAZE00000009	CDS	37576787	37576851	+
GWHAAZE00000009	CDS	37583806	37584335	+
GWHAAZE00000009	CDS	37584414	37584816	+
GWHAAZE00000009	CDS	37584917	37584921	+
GWHAAZE00000009	CDS	37585190	37585255	+
GWHAAZE00000009	CDS	37586277	37586351	+
GWHAAZE00000009	CDS	37586444	37586609	+
GWHAAZE00000009	CDS	37586714	37586804	+
GWHAAZE00000009	CDS	37588074	37588180	+
GWHAAZE00000009	CDS	37588342	37588452	+
GWHAAZE00000009	three_prime_UTR	37588453	37588538	+
GWHAAZE00000009	three_prime_UTR	37589030	37589121	+

Transcript Sequence
>GWHTAAZE030096 ATGGCGGCTTCTCACCTTCTCTCTCACTCCACCAATTTCCTAAAACCCTTAAAACACCCTTCACCCTCACCCCCACCCCATTTTCGCCTTCATCCCATCATTCCCTTCAAACCCAACTTCAAAACCCTAACCCTAAAGGCACTCCTCTCCCAAAACCCCTCAAAAACCACCACCATTGATCCACAAACTCAATCTTTTCGCCATTGTTTCAGCAAATCGGAAGATGGGTTTTTGTACTGTGAGGGTCTTAAGGTTCAAGATGTTATGGATAGGGTTGATAGGAGGCCCTTTTATCTGTACAGTAAGCCCCAAATTACAAGAAACTTTGATGCTTATAGTGAGGCATTGGAGGGTTTGAACTCGATTATTGGGTATGCAATTAAGGCCAACAATAATTTCAAGATTTTGGAGCATTTGAGGAAGCTGGGTTGTGGTGCTGTTTTGGTTAGTGGGAATGAGCTTAGATTGGCACTATGTGCCGGTTTTGATCCTACAAGGTGCATCTTCAATGGAAATGGAAAGCTTTTAGATGATCTCGTATTGGCTGCCCAAGAAGGTGTCTTTGTCAATGTTGATAGTGAATTTGATTTGGATAATATTGTATCAGCTGCGAGAATTGCCCGGAAGAAGGTTAATGTACTTCTTCGAATCAATCCAGATGTAGATCCTCAGGTCCATCCTTATGTTGCCACTGGAAACAAGAACTCCAAATTTGGTATTAGAAATGAGAAGCTGCAATGGTTTCTAGATGAAGTGAAGGCACATCCTAATGAACTGAAGCTTGTTGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAGGTAGATATTTTCAGAGATGCTGCAGTCCTTATGGTGAACTATATTGACCAAATTCGATCCCAAGGCTTTGAAATTGATTACTTAAACATCGGAGGTGGTCTCGGAATTGATTATTATCATACTGGAGCTGTCCTCCCCACCCCCAGGGATCTTATTAACACTCACATAGAGTTGGTTTCTCCTACACCACCCGAAGCTGAGGTTTCTAAATTTGATGTGGTGGGACCCGTTTGCGAGTCTGCAGATTTCCTAGGCAAGGACAGGGAACTTCCTACTCCATCTGTGGGCACCGGCCTAGTAGTTCACGATGCAGGCGCTTACTGCATGAGCATGGCATCAACTTACAATCTCAAGATGCGCCCACCTGAATACTGGATTGAAGAAGATGGATCAGTGGCCAAAATTAGGCATGGGGAGACATTTGAAGACCACATGAGATACTTTGAAGGGTTCATGCCCCATCCTTACCGAGGTGGTTGTAAACCTTGGCATTGCTTGCCCAATATGTCAGTGGTTCCATCGCACATCCGTGGAAGGTGGTTTTGCAGTCTTAGTACTGAGTCATATTTCCAAGGTCTCTCCCAAGCTCTTGGTTTAGACATGGCCAGTGACACCCCCAGTGGCCTTCCTAATGGCACAGTTCCCAATGGCACCATCAAGGCGCATCCTGATCCACAGAGGACTTACCAAGTTGTTGTGGCTGCAACTCAGAATATGGGTATCGGCAAGGATGGTAAATTACCCTGGAGATTGCCTTCTGATCTCAAATTTTTCAAGGATATTACCAAGACTACATCAGATCCTGTGAAAAAGAATGCAATCATAATGGGTAGAAAAACATGGGAAAGTATTCCCTTGGAGCATCGACCCCTCCCCGGTCGTCTTAATGTTGTTCTCACTCGTTCCGGAAGTTTTGATATTGCAACTGCGGAGAATGTTTTAATATGTGGAAGCATGCTTTCTGCTTTGCAATTATTAGCAGCATCTCCATATTGCCTATCGATTGATAAAGTGTTTGTCATAGGAGGTGGACAAATATTAAGGGAAGCCCTCAATGCTCCCGGATGTGATGCTATTCACATCACTGAAATTCAGTCAAGCATTGAATGCGATACTTTCATCCCTGCTATTGATACCTCTGTATTTCGGCCATGGTACTCATCCTACCCTTTGGTGGAAAACAACCTTCACCATTGTTGTACGACATATGTTCGTGTGCGGTACTCTACAGTTGAACCCGTCAGTGAGACTAATGGTCTGATATCTGATGGTGGTAACTTAGATGTTGTCAAGTTTGAGGTGAAGAAGTTTTCTTTCCTGCCCAAGATGATTTTTGAGAAACACGAGGAGTACTTGTATTTGAGGCTGGTTGAAGACATCATTTCAAATGGTGCCTCAAAGGATGATAGGACACGGACTGGTACTCTGTCAAAATTCGGTTGCCAGATGAGAAAGTGTTTTGGCGAGGAGTTGTTGAAGAACTTTTGTGGTTTATCAGTGGTTCGACAAGCGCTAAGTATTGGTTTAGTGGATAGGGAAGAAGGTGACTTGGGACCAGTGTACGGGTTTCAGTGGAGACACTTTGGTGCGAGGTATACTGACATGCATGCTGACTACACTGGCCAAGGATTTGACCAGTTGCTAGATGTTATTAACAAGATCAAAAATAATCCCGATGACAGACGAATTATTCTTTCAGCATGGAATCCTTCTGATCTCAAACAGATGGCGCTTCCACCTTGTCACATGTTTGCACAGATGTATCAGCGTTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATCGCATCTTATGCCCTCTTGACGTGCATGATTGCTCATGTTTGTGACCTTGTCCCTGGCGATTTTATCCATGTTATTGGGGATGCTCATGTCTATAGCACACATGTCAGACCTCTCGAGGATCAGCTGCAGAAGCTGCCTAAACCTTTTCCAATTTTGAAGATCAATCCTCTGAAGAAGGACATAGATTCCTTTGAGGCTGCTGATTTTGAACTCATTGGTTATGATCCTCATCAAAAAATAGAAATGAAAATGGCAGTTTAGATTTACTGACTATGATTTTGAGTTTTGGTAAAGGTAGCTTCGAGTCCTGGGCACCCCTTTTAAGCAATACGTGCTCTTTTTTGGAGGCGCGGTTACTGGGGGCGTTATCAGATAGCGAGAATAAAGGATTGCTAAGTCATATAGAAAAAACTAAAAAATGCAAGTGATTACAAATGTA

Network for GWHGAAZE030062

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02784.17	Orn_Arg_deC_N	104	315	5.90E-44
PF00278.23	Orn_DAP_Arg_deC	280	379	2.90E-09
PF00186.20	DHFR_1	504	675	1.70E-36
PF00303.20	Thymidylat_synt	786	962	1.70E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13998	DHFR-TS	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Folate biosynthesis	map00790
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006231	biological_process	dTMP biosynthetic process
GO:0046654	biological_process	tetrahydrofolate biosynthetic process
GO:0009089	biological_process	lysine biosynthetic process via diaminopimelate
GO:0004146	molecular_function	dihydrofolate reductase activity
GO:0003824	molecular_function	catalytic activity
GO:0004799	molecular_function	thymidylate synthase activity
GO:0008836	molecular_function	diaminopimelate decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.919
	SRR3591706	second leaf	36.419
	SRR3591707	mature leaf	13.859
	SRR3591708	Shoot apex	39.570
	SRR3591709	Stem	51.573
	SRR3591710	White floral bud	31.268
	SRR3591711	White flower	18.701
	SRR3591712	Green floral bud	42.329
	SRR3591713	Yellow flower	11.458
SRP173429	SRR8316895	Juvenile bud stage	37.440
	SRR8316896	Juvenile bud stage	55.666
	SRR8316897	Juvenile bud stage	32.642
	SRR8316894	Third green stage	13.516
	SRR8316900	Third green stage	43.043
	SRR8316901	Third green stage	37.096
	SRR8316898	Complete white stage	9.706
	SRR8316899	Complete white stage	59.988
	SRR8316903	Complete white stage	14.028
	SRR8316902	Silver flowering stage	2.809
	SRR8316904	Silver flowering stage	4.230
	SRR8316905	Silver flowering stage	1.804
	SRR8316906	Gold flowering stage	5.442
	SRR8316907	Gold flowering stage	6.285
	SRR8316908	Gold flowering stage	7.094
SRP132670	SRR6706286	Control	24.889
	SRR6706287	Light intensity 50%	27.079
	SRR6706288	Light intensity 20%	28.059
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.223
	CNS0095593	Slightly white alabastrum(diploid) 2	35.211
	CNS0095594	Slightly white alabastrum(diploid) 3	28.017
	CNS0095595	Whole white alabastrum(diploid) 2	30.714
	CNS0095596	Whole white alabastrum(diploid) 3	23.270
	CNS0095597	Whole white alabastrum(diploid) 4	20.074
	CNS0095598	Silvery flower (diploied) 1	26.987
	CNS0095599	Silvery flower (diploied) 2	42.287
	CNS0095600	Silvery flower (diploied) 3	21.728
	CNS0095601	Golden flower (diploid) 1	37.472
	CNS0095602	Golden flower (diploid) 2	30.551
	CNS0095603	Golden flower (diploid) 3	29.810
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.444
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.092
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.662
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.932
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.121
	CNS0095610	Silvery flower (tetraploid) 1	17.573
	CNS0095611	Silvery flower (tetraploid) 2	18.186
	CNS0095612	Silvery flower (tetraploid) 3	10.579
	CNS0095613	Golden flower (tetraploid) 1	5.573
	CNS0095614	Golden flower (tetraploid) 2	14.731
	CNS0095615	Golden flower (tetraploid) 3	2.278
CRA001975	CRR073297	Stem 1	34.056
	CRR073298	Stem 2	27.372
	CRR073299	Stem 3	22.894
	CRR073300	Leaf 1	30.674
	CRR073301	Leaf 2	29.145
	CRR073302	Leaf 3	25.855
	CRR073303	Juvenile bud 1	27.633
	CRR073304	Juvenile bud 2	18.086
	CRR073305	Juvenile bud 3	33.301
	CRR073306	Third green 1	1.190
	CRR073307	Third green 2	0.820
	CRR073308	Third green 3	1.271
	CRR073309	Second white 1	3.858
	CRR073310	Second white 2	2.244
	CRR073311	Second white 3	2.025
	CRR073312	Silver flowering 1	1.647
	CRR073313	Silver flowering 2	1.961
	CRR073314	Silver flowering 3	1.297
	CRR073315	Gold flowering 1	10.565
	CRR073316	Gold flowering 2	17.307
	CRR073317	Gold flowering 3	8.660
	CRR073318	Tawny withering 1	40.550
	CRR073319	Tawny withering 2	35.227
	CRR073320	Tawny withering 3	42.145