Gene detail

Detail information of GWHGAAZE030052

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009341962.1	1.4265E-143	PREDICTED: syntaxin-112-like [Pyrus x bretschneideri]
Swissprot	tr\|Q9ZPV9\|SY112_ARATH	3E-112	Syntaxin-112
trEMBL	tr\|M0ZJC7\|M0ZJC7_SOLTU	9E-144	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400001933}
TAIR10	AT2G18260.1	3E-79	syntaxin of plants 112

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37411137	37412012	-
GWHAAZE00000009	mRNA	37411137	37412012	-
GWHAAZE00000009	exon	37411137	37412012	-
GWHAAZE00000009	CDS	37411137	37412012	-

Transcript Sequence
>GWHTAAZE030086 ATGAATGATCTAATGACGAAATCGTTTCTAAGTTATGTCGAATTGAAGAAACAGGCCATGAAAGACCTAGAAGCAGGGCCTGAAATAGAAATAGGGCAATTGGATCCAACTGATGAAAGAAACCTCTCACAGTTCTTTGAAGAGGTTACTAAAATTAAGGTTGATATGGAAGAGATCTCCAATTTGCTTCTTGATCTTCAAGATCTCAATGAAGAGACAAAATCCACTTGCAGTGCTAAAGTTCTTCGAGGCCTAAGGGACCGAATCAACTCCGATATGGTCACTGTTCTCCGTATGGCAAAAGCCATCAAATCTAAATTAGAAGCCCTTGATAAATCCAATGTGGGGGGTAGGCCTAGTTCATCGGCTGCAGTTGATCGAACAAGAACTTCGGTGACTAATGGACTGAGGGTCAAACTGAGGGATATGATGAATGATTTTCAGGCCTTGAGAGACAAGATTGTGAAGGATCACAAAGAGGGTCTTAAGAGGAGGTATTATAATGCCACAGGGGAGGAACCTAGTGAGGAGGTGATTGAGAAGATGGTCTCCGGAAGAGGGCAAATTGGGGTTTTTGAGGGGAAGATGGATTTGGTGATGGAGAATCAAGAAAGGCTGGAGGCTGTGAAGGAGATACAGAGGAGTTTGACTGAGCTCCATGGAGTGTTTCTTGATATGGCTGTATTGGTTGAGACACAAGGTGAACAGATTAATGACATCGAACAGAATGTGGCTAATGCTGGAGCGTATATCAGCGGTGGGACGAAAGAATTCGATCGCGCTAAAGAGATGAAGAAGAAGAGGACTTGGGCTTGTTGGGTTGGGATTTTTCTGCTGGTGTTGATTTTGGTATGCCTCATTTCAGTTCTATCTTGA

Network for GWHGAAZE030052

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00804.26	Syntaxin	42	234	1.70E-53
PF05739.20	SNARE	235	284	2.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08486	STX1B_2_3	SNARE interactions in vesicular transport	map04130
K08486	STX1B_2_3	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0006886	biological_process	intracellular protein transport
GO:0016020	cellular_component	membrane
GO:0005484	molecular_function	SNAP receptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.630
	SRR3591706	second leaf	1.874
	SRR3591707	mature leaf	0.925
	SRR3591708	Shoot apex	9.539
	SRR3591709	Stem	4.616
	SRR3591710	White floral bud	0.816
	SRR3591711	White flower	0.442
	SRR3591712	Green floral bud	1.428
	SRR3591713	Yellow flower	0.138
SRP173429	SRR8316895	Juvenile bud stage	1.496
	SRR8316896	Juvenile bud stage	2.892
	SRR8316897	Juvenile bud stage	0.538
	SRR8316894	Third green stage	1.036
	SRR8316900	Third green stage	1.844
	SRR8316901	Third green stage	0.863
	SRR8316898	Complete white stage	0.579
	SRR8316899	Complete white stage	2.360
	SRR8316903	Complete white stage	0.873
	SRR8316902	Silver flowering stage	0.089
	SRR8316904	Silver flowering stage	0.558
	SRR8316905	Silver flowering stage	0.077
	SRR8316906	Gold flowering stage	0.110
	SRR8316907	Gold flowering stage	0.160
	SRR8316908	Gold flowering stage	0.042
SRP132670	SRR6706286	Control	1.810
	SRR6706287	Light intensity 50%	1.684
	SRR6706288	Light intensity 20%	1.940
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.674
	CNS0095593	Slightly white alabastrum(diploid) 2	1.536
	CNS0095594	Slightly white alabastrum(diploid) 3	1.079
	CNS0095595	Whole white alabastrum(diploid) 2	2.623
	CNS0095596	Whole white alabastrum(diploid) 3	0.680
	CNS0095597	Whole white alabastrum(diploid) 4	1.258
	CNS0095598	Silvery flower (diploied) 1	0.613
	CNS0095599	Silvery flower (diploied) 2	0.393
	CNS0095600	Silvery flower (diploied) 3	0.285
	CNS0095601	Golden flower (diploid) 1	0.654
	CNS0095602	Golden flower (diploid) 2	0.464
	CNS0095603	Golden flower (diploid) 3	0.288
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.166
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.606
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.661
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.782
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.123
	CNS0095610	Silvery flower (tetraploid) 1	0.229
	CNS0095611	Silvery flower (tetraploid) 2	0.071
	CNS0095612	Silvery flower (tetraploid) 3	0.293
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.111
	CNS0095615	Golden flower (tetraploid) 3	0.081
CRA001975	CRR073297	Stem 1	2.589
	CRR073298	Stem 2	1.232
	CRR073299	Stem 3	2.027
	CRR073300	Leaf 1	1.465
	CRR073301	Leaf 2	1.237
	CRR073302	Leaf 3	0.241
	CRR073303	Juvenile bud 1	1.412
	CRR073304	Juvenile bud 2	0.629
	CRR073305	Juvenile bud 3	1.117
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.185
	CRR073308	Third green 3	0.382
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.562
	CRR073317	Gold flowering 3	0.672
	CRR073318	Tawny withering 1	5.732
	CRR073319	Tawny withering 2	1.708
	CRR073320	Tawny withering 3	4.486