Detail information of GWHGAAZE030030


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011037540.16.96639E-36PREDICTED: ras-related protein Rab7 [Populus euphratica]
COGYP_008153306.10.0000002hypothetical protein SCE1572_34665
Swissprottr|Q9XI98|RAG3E_ARATH3E-38Ras-related protein RABG3e
trEMBLtr|Q42248|Q42248_ARATH7E-37Rab7 related GTP binding protein {ECO:0000313|EMBL:CAA83207.1} (Fragment)
TAIR10AT1G49300.28E-31RAB GTPase homolog G3E

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3695567436956162-
GWHAAZE00000009mRNA3695567436956162-
GWHAAZE00000009exon3695611036956162-
GWHAAZE00000009exon3695591636955942-
GWHAAZE00000009exon3695567436955797-
GWHAAZE00000009CDS3695611036956162-
GWHAAZE00000009CDS3695591636955942-
GWHAAZE00000009CDS3695567436955797-
Transcript Sequence

Network for GWHGAAZE030030

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras10615.70E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07897RAB7A Endocytosis map04144
Phagosomemap04145
Autophagy - animalmap04140
Autophagy - yeastmap04138
Mitophagy - animalmap04137

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf129.800
SRR3591706second leaf65.009
SRR3591707mature leaf71.212
SRR3591708Shoot apex93.382
SRR3591709Stem118.560
SRR3591710White floral bud211.751
SRR3591711White flower238.485
SRR3591712Green floral bud108.630
SRR3591713Yellow flower206.343
SRP173429 SRR8316895Juvenile bud stage 59.025
SRR8316896Juvenile bud stage 71.705
SRR8316897Juvenile bud stage 44.070
SRR8316894Third green stage 40.108
SRR8316900Third green stage 117.208
SRR8316901Third green stage 104.494
SRR8316898Complete white stage 104.812
SRR8316899Complete white stage 173.229
SRR8316903Complete white stage 201.371
SRR8316902Silver flowering stage136.861
SRR8316904Silver flowering stage206.165
SRR8316905Silver flowering stage134.308
SRR8316906Gold flowering stage 390.780
SRR8316907Gold flowering stage 312.721
SRR8316908Gold flowering stage 363.099
SRP132670SRR6706286Control179.847
SRR6706287Light intensity 50%182.439
SRR6706288Light intensity 20%186.180
CNP0000432CNS0095592Slightly white alabastrum(diploid) 155.637
CNS0095593Slightly white alabastrum(diploid) 251.259
CNS0095594Slightly white alabastrum(diploid) 348.853
CNS0095595Whole white alabastrum(diploid) 251.411
CNS0095596Whole white alabastrum(diploid) 341.907
CNS0095597Whole white alabastrum(diploid) 464.143
CNS0095598Silvery flower (diploied) 168.245
CNS0095599Silvery flower (diploied) 282.253
CNS0095600Silvery flower (diploied) 3173.458
CNS0095601Golden flower (diploid) 191.334
CNS0095602Golden flower (diploid) 2158.584
CNS0095603Golden flower (diploid) 3162.171
CNS0095604Slightly white alabastrum(tetraploid) 171.926
CNS0095605Slightly white alabastrum(tetraploid) 265.074
CNS0095606Slightly white alabastrum(tetraploid) 3134.520
CNS0095607Whole white alabastrum(tetraploid) 149.883
CNS0095608Whole white alabastrum(tetraploid) 246.682
CNS0095609Whole white alabastrum(tetraploid) 397.409
CNS0095610Silvery flower (tetraploid) 1264.457
CNS0095611Silvery flower (tetraploid) 2180.153
CNS0095612Silvery flower (tetraploid) 3181.874
CNS0095613Golden flower (tetraploid) 1243.915
CNS0095614Golden flower (tetraploid) 2232.339
CNS0095615Golden flower (tetraploid) 3332.164
CRA001975CRR073297Stem 159.966
CRR073298Stem 255.424
CRR073299Stem 365.752
CRR073300Leaf 154.162
CRR073301Leaf 244.888
CRR073302Leaf 381.498
CRR073303Juvenile bud 175.377
CRR073304Juvenile bud 287.275
CRR073305Juvenile bud 374.890
CRR073306Third green 1144.240
CRR073307Third green 2142.040
CRR073308Third green 3110.508
CRR073309Second white 1147.339
CRR073310Second white 2126.760
CRR073311Second white 3103.870
CRR073312Silver flowering 192.188
CRR073313Silver flowering 2116.316
CRR073314Silver flowering 379.196
CRR073315Gold flowering 160.780
CRR073316Gold flowering 268.770
CRR073317Gold flowering 345.657
CRR073318Tawny withering 151.895
CRR073319Tawny withering 252.164
CRR073320Tawny withering 348.878