Gene detail

Detail information of GWHGAAZE029875

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP35967.1	hypothetical protein JCGZ_09939 [Jatropha curcas]
COG	YP_557464.1	acylating methylmalonate-semialdehyde dehydrogenase
Swissprot	tr\|Q0WM29\|MMSA_ARATH	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (Precursor)
trEMBL	tr\|A0A067KIM1\|A0A067KIM1_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP35967.1}
TAIR10	AT2G14170.1	aldehyde dehydrogenase 6B2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34691717	34700415	+
GWHAAZE00000009	mRNA	34691717	34700415	+
GWHAAZE00000009	exon	34691717	34691812	+
GWHAAZE00000009	exon	34692597	34692788	+
GWHAAZE00000009	exon	34692887	34693048	+
GWHAAZE00000009	exon	34693126	34693204	+
GWHAAZE00000009	exon	34693290	34693444	+
GWHAAZE00000009	exon	34694474	34694537	+
GWHAAZE00000009	exon	34694924	34695003	+
GWHAAZE00000009	exon	34695261	34695326	+
GWHAAZE00000009	exon	34696531	34696581	+
GWHAAZE00000009	exon	34696701	34696852	+
GWHAAZE00000009	exon	34697579	34697669	+
GWHAAZE00000009	exon	34697818	34697898	+
GWHAAZE00000009	exon	34699170	34699247	+
GWHAAZE00000009	exon	34699344	34699379	+
GWHAAZE00000009	exon	34699491	34699534	+
GWHAAZE00000009	exon	34699621	34699699	+
GWHAAZE00000009	exon	34700060	34700150	+
GWHAAZE00000009	exon	34700306	34700415	+
GWHAAZE00000009	CDS	34691717	34691812	+
GWHAAZE00000009	CDS	34692597	34692788	+
GWHAAZE00000009	CDS	34692887	34693048	+
GWHAAZE00000009	CDS	34693126	34693204	+
GWHAAZE00000009	CDS	34693290	34693444	+
GWHAAZE00000009	CDS	34694474	34694537	+
GWHAAZE00000009	CDS	34694924	34695003	+
GWHAAZE00000009	CDS	34695261	34695326	+
GWHAAZE00000009	CDS	34696531	34696581	+
GWHAAZE00000009	CDS	34696701	34696852	+
GWHAAZE00000009	CDS	34697579	34697669	+
GWHAAZE00000009	CDS	34697818	34697898	+
GWHAAZE00000009	CDS	34699170	34699247	+
GWHAAZE00000009	CDS	34699344	34699379	+
GWHAAZE00000009	CDS	34699491	34699534	+
GWHAAZE00000009	CDS	34699621	34699699	+
GWHAAZE00000009	CDS	34700060	34700150	+
GWHAAZE00000009	CDS	34700306	34700415	+

Transcript Sequence
>GWHTAAZE029909 AAGACCTTGAGGTCGTTGAATCCTCAGATTTTAGCTACTAGAATTTCTCATCTCTCCACCTCTGCTGAGCCTTCTCGGAGCCATGGTGGTCCTCCGTTTACGCATTTTGAAGAGGAATTTCTGTCTCTTTCTATTTTTTTACGTCCTCTTATTGCTGTTTGCATCTGTTTCTTTCTATCATTCGTTTGTACTAAAAGTTTATATGACCCTTATCAGAGAGTTCCAAATCTAGTGGGGGGTAGCTTTGTAGATTCGCAGTCATCTGAATTCATAGATGTTGTAAATCCAGCAACACAAGAAGTTGTTTCTCAATTACCTTTAACTACCAATGAAGAGTTCAAGGCTGCAGTATCTGCTGCCAAACAAGCTTTTCCATCGTGGAGAAACACACCAATTACAACTCGTCAGCGCATCATGTTCAAGCTCCAAGAACTTATTCGGAGAGACATGGATAAGATTGCCATGAACATCACCACGGAACAGGGAAAGACATTGAAGGATGCACAGGGAGATGTGTTCCGTGGACTAGAGGTGGTGGAACATGCTTGTGGAATGGCAACTCTACAGATGGGGGAGTTTGTTCCCAATGTGTCCAACGGAATTGATACCTACAGTATCAGAGAGCCACTTGGTGTGTGTGCTGGGATATGTCCCTTTAACTTTCCAGCAATGATTCCCTTGTGGATGTTTCCAGTTGCAGTAACATGTGGCAACACTTTTGTTCTAAAGCCATCAGAGAAAGATCCAGGCGCTTCTATGATGCTTGCAGAGTTGGCAATGGAGGCCGGTTTACCTAATGGTGTTTTAAATATTGTTCATGGCACCAATGACGTTGTTAATGCCATTTGTGATGATGACAATATCAGAGCTATATCATTTGTTGGTTCAAATACAGCTGGCATGCATATATACTCAAGAGCATCAGCTAAGGGGAAACGTGTTCAGTCCAATATGGGAGCTAAAAATCATGGAATTGTCATGCCTGATGCAAGCATAGAGGCTACACTAAATGCACTTGTTGCAGCTGGTTTTGGTGCTGCAGGACAAAGGTGCATGGCTTTGAGCACAGTGGTCTTTGTTGGACCTTCAAAAGAATGGGAAGATAAGCTAGTGGAGCGTGCCAAAGCACTGAAAGTAAATGCTGGAACAGAACCTGCTGCGGACCTTGGCCCAGTAATTAGCAAACAGGCTAAGGAACGGATATGTAAATTGATCCAAGGTGGTGTTGAAAGTGGTGCCCGATTGTTGCTTGATGGAAGAGATATTGTGGTACCAGGCTACGAGCATGGGAACTTTATTGGGCCCACCATCTTATCTGGTGTCACTGCCGATATGGAATGTTATAAGGAAGAGATTTTTGGACCAGTTCTTCTTTGTATGCAGGCTGACAGTCTAGAAGAAGCCATAAGCATCGTTAACAGAAATAAATATGGCAATGGAGCTTCTATATTCACCACATCTGGTGTAGCAGCAAGGAAATTCCAAACTGAGATTGAGGCTGGGCAGGTCGGGATCAACGTTCCAATTCCAGTTCCTTTACCATTCTTCTCATTTACTGGCTCGAAGTCGTCATTTGCAGGCGATCTGAATTTCTATGGGAAAGCTGGAGTTAATTTTTATACACAGATAAAAACAGTGACTCAGCAGTGGAAGGATTTACCAAGTGGAACTGGAGTGTCCCTGGCAATGCCTACTTCCCAGAAGTGA

Network for GWHGAAZE029875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	82	546	6.90E-143

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00140	mmsA, iolA, ALDH6A1	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Inositol phosphate metabolism	map00562
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0004491	molecular_function	methylmalonate-semialdehyde dehydrogenase (acylating) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.079
	SRR3591706	second leaf	23.784
	SRR3591707	mature leaf	30.734
	SRR3591708	Shoot apex	43.362
	SRR3591709	Stem	74.861
	SRR3591710	White floral bud	81.331
	SRR3591711	White flower	89.129
	SRR3591712	Green floral bud	64.774
	SRR3591713	Yellow flower	112.700
SRP173429	SRR8316895	Juvenile bud stage	44.322
	SRR8316896	Juvenile bud stage	65.425
	SRR8316897	Juvenile bud stage	29.126
	SRR8316894	Third green stage	24.016
	SRR8316900	Third green stage	79.165
	SRR8316901	Third green stage	71.712
	SRR8316898	Complete white stage	48.745
	SRR8316899	Complete white stage	97.589
	SRR8316903	Complete white stage	59.031
	SRR8316902	Silver flowering stage	43.816
	SRR8316904	Silver flowering stage	57.288
	SRR8316905	Silver flowering stage	29.297
	SRR8316906	Gold flowering stage	95.369
	SRR8316907	Gold flowering stage	112.155
	SRR8316908	Gold flowering stage	95.954
SRP132670	SRR6706286	Control	103.664
	SRR6706287	Light intensity 50%	96.438
	SRR6706288	Light intensity 20%	101.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	63.313
	CNS0095593	Slightly white alabastrum(diploid) 2	58.487
	CNS0095594	Slightly white alabastrum(diploid) 3	62.885
	CNS0095595	Whole white alabastrum(diploid) 2	59.266
	CNS0095596	Whole white alabastrum(diploid) 3	60.420
	CNS0095597	Whole white alabastrum(diploid) 4	57.948
	CNS0095598	Silvery flower (diploied) 1	108.869
	CNS0095599	Silvery flower (diploied) 2	100.876
	CNS0095600	Silvery flower (diploied) 3	148.236
	CNS0095601	Golden flower (diploid) 1	105.961
	CNS0095602	Golden flower (diploid) 2	175.149
	CNS0095603	Golden flower (diploid) 3	171.831
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.947
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.558
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.237
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.987
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.154
	CNS0095610	Silvery flower (tetraploid) 1	105.766
	CNS0095611	Silvery flower (tetraploid) 2	136.563
	CNS0095612	Silvery flower (tetraploid) 3	132.218
	CNS0095613	Golden flower (tetraploid) 1	81.473
	CNS0095614	Golden flower (tetraploid) 2	107.919
	CNS0095615	Golden flower (tetraploid) 3	114.829
CRA001975	CRR073297	Stem 1	77.568
	CRR073298	Stem 2	71.998
	CRR073299	Stem 3	105.992
	CRR073300	Leaf 1	79.297
	CRR073301	Leaf 2	81.313
	CRR073302	Leaf 3	92.665
	CRR073303	Juvenile bud 1	111.191
	CRR073304	Juvenile bud 2	128.518
	CRR073305	Juvenile bud 3	130.340
	CRR073306	Third green 1	96.377
	CRR073307	Third green 2	92.391
	CRR073308	Third green 3	81.861
	CRR073309	Second white 1	188.542
	CRR073310	Second white 2	106.295
	CRR073311	Second white 3	95.563
	CRR073312	Silver flowering 1	116.712
	CRR073313	Silver flowering 2	143.138
	CRR073314	Silver flowering 3	109.217
	CRR073315	Gold flowering 1	61.610
	CRR073316	Gold flowering 2	68.689
	CRR073317	Gold flowering 3	65.450
	CRR073318	Tawny withering 1	94.198
	CRR073319	Tawny withering 2	78.280
	CRR073320	Tawny withering 3	85.345