Detail information of GWHGAAZE029694


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009589721.10PREDICTED: WD-40 repeat-containing protein MSI1 [Nicotiana tomentosiformis]
COGNP_487506.10.000000002hypothetical protein alr3466
Swissprottr|O22466|MSI1_SOLLC0WD-40 repeat-containing protein MSI1
trEMBLtr|B0LUS9|B0LUS9_TOBAC0Multicopy suppressor of IRA1 {ECO:0000313|EMBL:ABY84675.1}
TAIR10AT5G58230.10Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3122291931233775-
GWHAAZE00000009mRNA3122291931233775-
GWHAAZE00000009exon3122291931223340-
GWHAAZE00000009exon3122420431224299-
GWHAAZE00000009exon3122445631224580-
GWHAAZE00000009exon3122647131226560-
GWHAAZE00000009exon3123083631231162-
GWHAAZE00000009exon3123343131233775-
GWHAAZE00000009CDS3123343131233775-
GWHAAZE00000009CDS3123083631231162-
GWHAAZE00000009CDS3122647131226560-
GWHAAZE00000009CDS3122445631224580-
GWHAAZE00000009CDS3122420431224299-
GWHAAZE00000009CDS3122310331223340-
GWHAAZE00000009three_prime_UTR3122291931223102-
Transcript Sequence

Network for GWHGAAZE029694

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12265.9CAF1C_H4-bd19882.50E-28
PF00400.33WD402432814.80E-07
PF00400.33WD403463810.0014
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K10752RBBP4, HAT2, CAF1, MIS16 Cellular senescence map04218

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.804
SRR3591706second leaf15.469
SRR3591707mature leaf13.106
SRR3591708Shoot apex29.710
SRR3591709Stem23.913
SRR3591710White floral bud31.949
SRR3591711White flower36.758
SRR3591712Green floral bud40.579
SRR3591713Yellow flower28.449
SRP173429 SRR8316895Juvenile bud stage 18.509
SRR8316896Juvenile bud stage 30.103
SRR8316897Juvenile bud stage 11.407
SRR8316894Third green stage 10.812
SRR8316900Third green stage 35.531
SRR8316901Third green stage 35.089
SRR8316898Complete white stage 10.933
SRR8316899Complete white stage 42.723
SRR8316903Complete white stage 15.001
SRR8316902Silver flowering stage13.374
SRR8316904Silver flowering stage13.269
SRR8316905Silver flowering stage6.494
SRR8316906Gold flowering stage 20.929
SRR8316907Gold flowering stage 26.934
SRR8316908Gold flowering stage 21.524
SRP132670SRR6706286Control30.076
SRR6706287Light intensity 50%32.363
SRR6706288Light intensity 20%36.081
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.410
CNS0095593Slightly white alabastrum(diploid) 232.273
CNS0095594Slightly white alabastrum(diploid) 328.044
CNS0095595Whole white alabastrum(diploid) 223.528
CNS0095596Whole white alabastrum(diploid) 324.651
CNS0095597Whole white alabastrum(diploid) 421.833
CNS0095598Silvery flower (diploied) 122.993
CNS0095599Silvery flower (diploied) 217.983
CNS0095600Silvery flower (diploied) 327.655
CNS0095601Golden flower (diploid) 119.163
CNS0095602Golden flower (diploid) 224.323
CNS0095603Golden flower (diploid) 321.980
CNS0095604Slightly white alabastrum(tetraploid) 126.452
CNS0095605Slightly white alabastrum(tetraploid) 225.511
CNS0095606Slightly white alabastrum(tetraploid) 342.924
CNS0095607Whole white alabastrum(tetraploid) 124.070
CNS0095608Whole white alabastrum(tetraploid) 220.141
CNS0095609Whole white alabastrum(tetraploid) 335.363
CNS0095610Silvery flower (tetraploid) 128.633
CNS0095611Silvery flower (tetraploid) 226.518
CNS0095612Silvery flower (tetraploid) 326.067
CNS0095613Golden flower (tetraploid) 118.817
CNS0095614Golden flower (tetraploid) 224.990
CNS0095615Golden flower (tetraploid) 320.133
CRA001975CRR073297Stem 137.206
CRR073298Stem 234.796
CRR073299Stem 340.180
CRR073300Leaf 138.672
CRR073301Leaf 242.295
CRR073302Leaf 337.478
CRR073303Juvenile bud 140.653
CRR073304Juvenile bud 235.301
CRR073305Juvenile bud 345.727
CRR073306Third green 118.310
CRR073307Third green 215.740
CRR073308Third green 316.552
CRR073309Second white 118.803
CRR073310Second white 216.514
CRR073311Second white 316.923
CRR073312Silver flowering 114.496
CRR073313Silver flowering 214.953
CRR073314Silver flowering 39.071
CRR073315Gold flowering 121.431
CRR073316Gold flowering 224.022
CRR073317Gold flowering 321.385
CRR073318Tawny withering 125.168
CRR073319Tawny withering 224.640
CRR073320Tawny withering 332.545